GNU bug report logs - #66070
[PATCH] gnu: python-pygenometracks: Remove syntax error in setup.py.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Subject: bug#66070: closed (Re: [bug#66070] [PATCH] gnu: python-pygenometracks:
 Remove syntax error in setup.py.)
Date: Sun, 24 Sep 2023 12:13:01 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#66070: [PATCH] gnu: python-pygenometracks: Remove syntax error in setup.py.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 66070 <at> debbugs.gnu.org.

-- 
66070: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=66070
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 66070-done <at> debbugs.gnu.org
Subject: Re: [bug#66070] [PATCH] gnu: python-pygenometracks: Remove syntax
 error in setup.py.
Date: Sun, 24 Sep 2023 14:11:29 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioinformatics.scm (python-pygenometracks)[arguments]:
> Add phase remove-invalid-syntax.

Applied, thank you!

-- 
Ricardo

[Message part 3 (message/rfc822, inline)]

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: python-pygenometracks: Remove syntax error in setup.py.
Date: Mon, 18 Sep 2023 13:16:44 +0200

* gnu/packages/bioinformatics.scm (python-pygenometracks)[arguments]:
Add phase remove-invalid-syntax.
---
 gnu/packages/bioinformatics.scm | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c78f017a24..e6d5edba94 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -16405,7 +16405,11 @@ (define-public python-pygenometracks
            (lambda _
              (substitute* "setup.py"
                (("matplotlib ==3.1.1")
-                "matplotlib >=3.1.1")))))))
+                "matplotlib >=3.1.1"))))
+         (add-after 'unpack 'remove-invalid-syntax
+           (lambda _
+             (substitute* "setup.py"
+               ((".\\*,") ",")))))))
     (propagated-inputs
      (list python-future
            python-gffutils

base-commit: 1d30ec935126f316187dfc26446347bc7de9868b
-- 
2.41.0

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