From unknown Mon Jun 23 04:14:47 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#66070] [PATCH] gnu: python-pygenometracks: Remove syntax error in setup.py. 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envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioinformatics.scm (python-pygenometracks)[arguments]: Add phase remove-invalid-syntax. --- gnu/packages/bioinformatics.scm | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c78f017a24..e6d5edba94 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16405,7 +16405,11 @@ (define-public python-pygenometracks (lambda _ (substitute* "setup.py" (("matplotlib ==3.1.1") - "matplotlib >=3.1.1"))))))) + "matplotlib >=3.1.1")))) + (add-after 'unpack 'remove-invalid-syntax + (lambda _ + (substitute* "setup.py" + ((".\\*,") ","))))))) (propagated-inputs (list python-future python-gffutils base-commit: 1d30ec935126f316187dfc26446347bc7de9868b -- 2.41.0 From unknown Mon Jun 23 04:14:47 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Subject: bug#66070: closed (Re: [bug#66070] [PATCH] gnu: python-pygenometracks: Remove syntax error in setup.py.) Message-ID: References: <87v8bz6a9u.fsf@elephly.net> <20230918111657.23482-1-madalinionel.patrascu@mdc-berlin.de> X-Gnu-PR-Message: they-closed 66070 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 66070@debbugs.gnu.org Date: Sun, 24 Sep 2023 12:13:01 +0000 Content-Type: multipart/mixed; boundary="----------=_1695557581-30132-1" This is a multi-part message in MIME format... ------------=_1695557581-30132-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #66070: [PATCH] gnu: python-pygenometracks: Remove syntax error in setup.py. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 66070@debbugs.gnu.org. --=20 66070: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D66070 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1695557581-30132-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 66070-done) by debbugs.gnu.org; 24 Sep 2023 12:12:04 +0000 Received: from localhost ([127.0.0.1]:41203 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qkNxz-0007oo-Pb for submit@debbugs.gnu.org; Sun, 24 Sep 2023 08:12:04 -0400 Received: from sender3-of-o59.zoho.com ([136.143.184.59]:21942) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qkNxw-0007oG-M7 for 66070-done@debbugs.gnu.org; Sun, 24 Sep 2023 08:12:03 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1695557506; cv=none; d=zohomail.com; s=zohoarc; b=MckTS67yKbdhlRdlOZrWwSUcXSfLOigptgz06MZ3E8RKXsx1T8YyJhR2VTydHew5NwlzZQtdfp/E6qDgBo0z5z5e1p8EDCNOlZEqqs35FvwWuU+i7PLIES+tKFlhMLX2UWNqeuWbyaOhkJEZvZci06pUvLUsd8mKG5+Wo4EBwxc= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1695557506; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=JgjGDjTbxsB1CQhkgk1cMdjICTOBac/D2ZSGTU6Cpkk=; b=nzNaIEJxAqBSQtqVVWcmBxoB0kf3P4tc/EgaymIhJJA8i+7OsCFPAOpQDLG8nSLZzkuiAnqs5ZF++wkS+ZXSYY6Yr9+G45/CBUtkDOWFGSdG4GWs0krqCJmHp7ZWgQhz32y5T/Kgm1Vd9S7OB3hqVkBXq6uKVK2ZCbTQ3gbePgI= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1695557506; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=JgjGDjTbxsB1CQhkgk1cMdjICTOBac/D2ZSGTU6Cpkk=; b=J9daJgQC6Azuy8v2S1+bQIEV1puDmlO9D0EuFTJmSfJ6msTTTrapMOlncwW3AurM U/SD9Rj48W1OJGQ0okElf+KFiJjOxGsPbuBvb/cQnPd2319BuA08wkrPV/zi4Jnbehf GJU1w9FtDl2l3Xmo5xzcsSZWAjp6ly8wBBcwoZeE= Received: from localhost (17-122-142-46.pool.kielnet.net [46.142.122.17]) by mx.zohomail.com with SMTPS id 169555750442540.1293980773346; Sun, 24 Sep 2023 05:11:44 -0700 (PDT) References: <20230918111657.23482-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.10.7; emacs 29.0.92 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#66070] [PATCH] gnu: python-pygenometracks: Remove syntax error in setup.py. Date: Sun, 24 Sep 2023 14:11:29 +0200 In-reply-to: <20230918111657.23482-1-madalinionel.patrascu@mdc-berlin.de> Message-ID: <87v8bz6a9u.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 66070-done Cc: 66070-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/bioinformatics.scm (python-pygenometracks)[arguments]: > Add phase remove-invalid-syntax. Applied, thank you! --=20 Ricardo ------------=_1695557581-30132-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 18 Sep 2023 11:17:42 +0000 Received: from localhost ([127.0.0.1]:52251 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qiCG6-00034A-42 for submit@debbugs.gnu.org; Mon, 18 Sep 2023 07:17:42 -0400 Received: from lists.gnu.org ([2001:470:142::17]:34324) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qiCG1-00033k-Fu for submit@debbugs.gnu.org; Mon, 18 Sep 2023 07:17:41 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qiCFk-00041Z-JP for guix-patches@gnu.org; Mon, 18 Sep 2023 07:17:20 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qiCFf-00065u-TV for guix-patches@gnu.org; Mon, 18 Sep 2023 07:17:20 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1695035829; x=1696850230; bh=8/txPVVdB8SQ3f4 yIFGaf27/Qaf7/Vwk6dpm0+tSaoc=; b=U/plIi7O21MZQDHndhmgHYwd0MNqbVu ojbbSJsNOrYyOfGTMdPUKamKtAr7TsKVgg4HOkJ+eBzhGFl62ehjAu6NhxqmZSxE V1oEolad+0XyVZwf3bZp49m3/ohMJyN6e+fAPBV/XwUg4bPxOHclirkpgb+rhzV1 4wUhDHqyQ9pc= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 8E72DA0144 for ; Mon, 18 Sep 2023 13:17:09 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Mon, 18 Sep 2023 13:17:08 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: python-pygenometracks: Remove syntax error in setup.py. Date: Mon, 18 Sep 2023 13:16:44 +0200 Message-ID: <20230918111657.23482-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27882.007 X-TM-AS-Result: No-10--2.925500-5.000000 X-TMASE-MatchedRID: MLP7otFihIbRTAZ5iUYfyRp/XfGqS4AAMVx/3ZYby7/AuQ0xDMaXkH4q tYI9sRE/jqQ82yy1I7S5Ylf3xk4v4qimPM07Al9Sxi///JpaHQMQ5L9qu3flQ5cFdomgH0lnFEU knJ/kEl5q8/xv2Um1avoLR4+zsDTtEPs/OvZqkzNruV6hT84yE3BrgQfKED5dPlC/NJWsIMERK5 I69B8RsgqHDEee8RSyYmknDgmKWbyK50gDxQ12PF+yt+TcgdsUeeHLZHSTwvghVldU12kdPe5WD AJNDeN6WSgmpbFZnEI1kD2KtSTmq2Pbt5Stv2K5/Ox0TU9Ci5I= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.925500-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27882.007 X-TM-SNTS-SMTP: BEE1CE47BC0B5CD945FFEC3B8AB9944A5FE4955A84ED5B2F769008AD25479E172000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioinformatics.scm (python-pygenometracks)[arguments]: Add phase remove-invalid-syntax. --- gnu/packages/bioinformatics.scm | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c78f017a24..e6d5edba94 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16405,7 +16405,11 @@ (define-public python-pygenometracks (lambda _ (substitute* "setup.py" (("matplotlib ==3.1.1") - "matplotlib >=3.1.1"))))))) + "matplotlib >=3.1.1")))) + (add-after 'unpack 'remove-invalid-syntax + (lambda _ + (substitute* "setup.py" + ((".\\*,") ","))))))) (propagated-inputs (list python-future python-gffutils base-commit: 1d30ec935126f316187dfc26446347bc7de9868b -- 2.41.0 ------------=_1695557581-30132-1--