From unknown Sat Aug 16 15:54:49 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#65916 <65916@debbugs.gnu.org> To: bug#65916 <65916@debbugs.gnu.org> Subject: Status: [PATCH] gnu: python-hicmatrix: Fix "'build': uncaught exception". Reply-To: bug#65916 <65916@debbugs.gnu.org> Date: Sat, 16 Aug 2025 22:54:49 +0000 retitle 65916 [PATCH] gnu: python-hicmatrix: Fix "'build': uncaught excepti= on". reassign 65916 guix-patches submitter 65916 M=C4=83d=C4=83lin Ionel Patra=C8=99cu severity 65916 normal tag 65916 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Wed Sep 13 09:40:41 2023 Received: (at submit) by debbugs.gnu.org; 13 Sep 2023 13:40:41 +0000 Received: from localhost ([127.0.0.1]:32972 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qgQ6j-0002hf-FG for submit@debbugs.gnu.org; Wed, 13 Sep 2023 09:40:41 -0400 Received: from lists.gnu.org ([2001:470:142::17]:35230) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qgQ6f-0002hP-Eb for submit@debbugs.gnu.org; Wed, 13 Sep 2023 09:40:41 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qgQ6S-0005wy-K2 for guix-patches@gnu.org; Wed, 13 Sep 2023 09:40:24 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qgQ6O-000337-Tt for guix-patches@gnu.org; Wed, 13 Sep 2023 09:40:24 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1694612400; x=1696426801; bh=5uZ4z7d5QK6ctxX DWCHfh6LilvbBQ3cUmePT/sm+1xU=; b=IRr9vnkQwsILQNFi17EkdbGiiHukKDC YiJ2u0vuVq+3BSCizXiRiAvFO8yeK3GFg3yoCqP6ezSLgVJhbHiytS01XEKml6r+ 517Aixv+7c2VVPTaddOaxkuAczbe4bD8FVPUQhnaUZTTnkzQHFZLLlghVJUDldwM LVu7hlqSy6Es= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 5F8D7300150 for ; Wed, 13 Sep 2023 15:40:00 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Wed, 13 Sep 2023 15:39:59 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: python-hicmatrix: Fix "'build': uncaught exception". Date: Wed, 13 Sep 2023 15:39:18 +0200 Message-ID: <20230913133942.9140-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27874.000 X-TM-AS-Result: No-10--3.901200-5.000000 X-TMASE-MatchedRID: tjEGPsGKY1KPo+6vQMop+ggqYHjJNWHeF4r8H5YrEqxYC5LPd7BvbQY4 DkdyRHcr8SxiFvswXE9gBKW7UCfQni/7QU2czuUNA9lly13c/gH4uJ1REX4MHYGIQZIfU2iYUEM pq/uzQlYI0JEpLdHmfOuT32VfjFjRGj8XjDB40G4dZEkR8Y/meQK0ZgbTOeKUpgSG2QKJXgOeAi CmPx4NwBnUJ0Ek6yhj2bNx1HEv7HAqtq5d3cxkNRqXnrxrKCOXwpUHVppxfBCk3wGna2jcyD61Q mVE5+S5tPknDqwcJ7k/5I2WcnUGg9CHEnS6R3KlKljHuQMfH1phcfCz1//qioHj402TsOQSDUEk BTZ8vOLxlyTCXQR4xioA5PA4dQuxuYpJR2kheXd+3BndfXUhXQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.901200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27874.000 X-TM-SNTS-SMTP: 2D94A8851080DBAAD102E2BA92238E31E1ED113255B5B171E2E0A0A0FCDE88852000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioinformatics.scm (python-hicmatrix): Add new phase 'fix-references that remove the * character from the name of the requirements. --- gnu/packages/bioinformatics.scm | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e24d70e569..06ff34e877 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16228,7 +16228,11 @@ (define-public python-hicmatrix (arguments (list #:phases - '(modify-phases %standard-phases + #~(modify-phases %standard-phases + (add-after 'unpack 'fix-references + (lambda _ + (substitute* "setup.py" + ((".\\*\"") ".0\"")))) (replace 'check (lambda* (#:key tests? #:allow-other-keys) (when tests? base-commit: 9996896dc252a02ba3b17473a685ce8957237546 -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Wed Sep 13 16:22:49 2023 Received: (at 65916-done) by debbugs.gnu.org; 13 Sep 2023 20:22:49 +0000 Received: from localhost ([127.0.0.1]:36153 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qgWNs-0007Ec-Nf for submit@debbugs.gnu.org; Wed, 13 Sep 2023 16:22:48 -0400 Received: from sender3-of-o57.zoho.com ([136.143.184.57]:21706) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qgWNp-0007EP-4R for 65916-done@debbugs.gnu.org; Wed, 13 Sep 2023 16:22:47 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1694636554; cv=none; d=zohomail.com; s=zohoarc; b=VjzpH41r6sD3YE/Sc+s+xuFoo4jZZNfioIcTFcHdF/0+Fj4wAhXmulr6ufediGqk1iyr5DuD+l2jO9SBoVVweZ1eFzJkaj0JOF5M94hVaug71BQ3DI9GCa60YO/98de/97SAhnk1OUDPG5CokAsLo/tiKr1yDUU61EKSGaeNHAw= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1694636554; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=2fl9X4sY6kW59AProOk7Jed5WmzRNfmGjY9iv4rCRjM=; b=Zo3cSsCqvkxQJDUK+ZU9MXN66FllesSsE0+OOBcsPOTpU35sTeqKRSkZpAfpmlNs3ElNezz/6ojX/YlRyN4aBea/qzDk6I6ih6MrWmARUm4l8MDIlKVuL2eS/37RpxOxI29VkeVajIhRtKogZBvdPO2c0PovOiNcTCC6x854OOQ= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1694636554; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=2fl9X4sY6kW59AProOk7Jed5WmzRNfmGjY9iv4rCRjM=; b=bsdO0+10wDtnkZHEdBXvoz7TnNCfsmXc11wLOOIyXJv63QGSHuea1IB1lXj8Fh0k QDRpet1UhOQ+GsmTmzUgXldZk0c7Gq5Grbp8jfot53nYDvvKDyx0ddW9eeXUfUvcED8 PtlNqZkYvI0LIuG5BIXHQoYqkk47dqNnFumSCsNo= Received: from localhost (195-108-142-46.pool.kielnet.net [46.142.108.195]) by mx.zohomail.com with SMTPS id 1694636553036380.08767918410877; Wed, 13 Sep 2023 13:22:33 -0700 (PDT) References: <20230913133942.9140-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.10.5; emacs 28.2 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#65916] [PATCH] gnu: python-hicmatrix: Fix "'build': uncaught exception". Date: Wed, 13 Sep 2023 22:21:32 +0200 In-reply-to: <20230913133942.9140-1-madalinionel.patrascu@mdc-berlin.de> Message-ID: <87pm2l258a.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 65916-done Cc: 65916-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi, thanks for the patch. > * gnu/packages/bioinformatics.scm (python-hicmatrix): Add new phase > 'fix-references that remove the * character from the name of the > requirements. > --- > gnu/packages/bioinformatics.scm | 6 +++++- > 1 file changed, 5 insertions(+), 1 deletion(-) > > diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatic= s.scm > index e24d70e569..06ff34e877 100644 > --- a/gnu/packages/bioinformatics.scm > +++ b/gnu/packages/bioinformatics.scm > @@ -16228,7 +16228,11 @@ (define-public python-hicmatrix > (arguments > (list > #:phases > - '(modify-phases %standard-phases > + #~(modify-phases %standard-phases > + (add-after 'unpack 'fix-references > + (lambda _ > + (substitute* "setup.py" > + ((".\\*\"") ".0\"")))) I simplified this to remove the =E2=80=9C.0=E2=80=9D, renamed the phase bec= ause it isn=E2=80=99t about fixing references, and removed the gexp. --=20 Ricardo From unknown Sat Aug 16 15:54:49 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Thu, 12 Oct 2023 11:24:07 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator