From debbugs-submit-bounces@debbugs.gnu.org Sat Sep 02 17:57:33 2023 Received: (at submit) by debbugs.gnu.org; 2 Sep 2023 21:57:33 +0000 Received: from localhost ([127.0.0.1]:38820 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcYcW-0003ZK-KO for submit@debbugs.gnu.org; Sat, 02 Sep 2023 17:57:33 -0400 Received: from lists.gnu.org ([2001:470:142::17]:40712) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcYcS-0003Z6-AH for submit@debbugs.gnu.org; Sat, 02 Sep 2023 17:57:31 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qcYcC-00042l-LU for guix-patches@gnu.org; Sat, 02 Sep 2023 17:57:12 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qcYc9-0006yY-L5 for guix-patches@gnu.org; Sat, 02 Sep 2023 17:57:12 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1693691809; x=1695506210; bh=DswvkuVL/2lCrAN BekCXHqCO1jyBSHyppruN1mEmuqQ=; b=ffmS++GRMzB9YG5wZP7z0n0xQfak9CL SBzKZUk491NsIhtkNDOvzrtK41pygUvWzjM5skgq8NkXA0I48aAV0C/NhGLLYj6V gK3j4gF8FJXrbkNw53IIP8iOc7DmJxVjdRuOAWK/Z8webHqkVYW1I9yHaj6JWX+5 XOInXR5cRY5U= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 4096E300339 for ; Sat, 2 Sep 2023 23:56:49 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Sat, 2 Sep 2023 23:56:48 +0200 From: Navid Afkhami To: Subject: [PATCH] gnu: Add r-interactivedisplay. Date: Sat, 2 Sep 2023 21:56:44 +0000 Message-ID: <8b873349673578098691476c6e023579ea78af96.1693691804.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27852.002 X-TM-AS-Result: No-10--3.387400-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH674lOop8Led8XjfR3d0weRnibY+6n81PkycO hvTXTlou4sCBjXtjOxAGN2ThlUwL/TvHzGcGqiIKrm7DrUlmNkIAy6p60ZV62fJ5/bZ6npdjKay T/BQTiGqeHoidXaPIyl0CPEnQLEHT8XQTkKkQLzJwacgVCvlolSL40IZJ7FpyjUpK2fLKmaKoak WGjnMNxA6ozNEACab0KUVZ3hjcQ732JFvFRRsvAeFv61dDRnYf0c5qUjgqLKvYlQeU3xrH0XtGJ m2N/3yI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.387400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27852.002 X-TM-SNTS-SMTP: 3D4E5814DB350FC48F4D5534E6F050E8356C8D861BAFEE0DA160A0FA4C39B3662000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: Navid Afkhami X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioconductor.scm (r-interactivedisplay): New variable. --- gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0070d7777c..f2cb268069 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7734,6 +7734,44 @@ (define-public r-impute microarray data, using nearest neighbor averaging.") (license license:gpl2+))) +(define-public r-interactivedisplay + (package + (name "r-interactivedisplay") + (version "1.38.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "interactiveDisplay" version)) + (sha256 + (base32 + "1y9fdnpz1bagrwhyj8jikp2q5fd9y74j48l5z7f0s88v88sa7szl")))) + (properties `((upstream-name . "interactiveDisplay"))) + (build-system r-build-system) + (propagated-inputs (list curl + zlib + r-annotationdbi + r-biocgenerics + r-biocmanager + r-category + r-dt + r-ggplot2 + r-gridsvg + r-interactivedisplaybase + r-plyr + r-rcolorbrewer + r-reshape2 + r-shiny + r-zlibbioc + r-xml)) + (native-inputs (list esbuild r-knitr)) + (home-page "https://bioconductor.org/packages/interactiveDisplay") + (synopsis + "Package for enabling powerful shiny web displays of Bioconductor objects") + (description + "This package offers interactive Shiny displays for Bioconductor objects. +In addition, this package empower users to develop engaging visualizations +and interfaces for working with Bioconductor data.") + (license license:artistic2.0))) + (define-public r-interactivedisplaybase (package (name "r-interactivedisplaybase") base-commit: c72bc0bb71a7315241c174636f96faee46a6dfa8 prerequisite-patch-id: 70b98dde8ca4056fb8bd1b731716853ac2c9f0a1 prerequisite-patch-id: da79dfabf48a66d58c294d8a8a5e036808df44d3 prerequisite-patch-id: b1b6000ebee26b162e35b26bffc5b8a6fdf820d8 -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Sep 12 11:14:43 2023 Received: (at 65707) by debbugs.gnu.org; 12 Sep 2023 15:14:43 +0000 Received: from localhost ([127.0.0.1]:59807 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qg56A-000323-J2 for submit@debbugs.gnu.org; Tue, 12 Sep 2023 11:14:42 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:45021) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qg567-00031n-Di for 65707@debbugs.gnu.org; Tue, 12 Sep 2023 11:14:41 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1694531668; x=1696346069; bh=YZkS0mdLcGSvP4U 6WaUc0bE1cV3+wflXuwS0HAwU+zA=; b=DTqch9dc7/2TU53z6VPEHs9J4iteIYs 8Oz6USqISKbtNvxZNRmfxEy3C/Zwc99nj4LaTzlMzmNdUO29YHCSnimQPItKlnGP ypsGvMdtbfBX6x+BGo0tZv0y8kTBusL3d89oWA9QZpn3SzsK3aTagf2Jmd+zKWTo wzGjgOA5bE2M= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id C9603A00CF for <65707@debbugs.gnu.org>; Tue, 12 Sep 2023 17:14:28 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Tue, 12 Sep 2023 17:14:28 +0200 From: Navid Afkhami To: <65707@debbugs.gnu.org> Subject: [PATCH] gnu: Add r-interactivedisplay. Date: Tue, 12 Sep 2023 15:14:22 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27872.000 X-TM-AS-Result: No-10--3.545400-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXT/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYmDs24hteATn5DVJcLgl1Rz74lOop8Led8XjfR3d0weRnibY+6n81PkycO hvTXTlouSkIUZyUQUJ7VijUdnqQBWgljF8fKL2gni8zVgXoAltsIJ+4gwXrEtwrbXMGDYqV+5V9 z3vqk3KtBW5IvyYMohwXERITdJMgcwGjHNAX2s+7X+hZ8houRmkpyP4pcQZqNyAsM2YECdRKCIU XdAk/dDCQ8PfqY4Q9X57xNlE5mpMMbG0bMSRYDWFhnoKW4f7Mf1c8RJIeS1QFmKmfpzNHMN X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.545400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27872.000 X-TM-SNTS-SMTP: CC7223343391C975D485E2D7CC11223292CCEFFAA1C94841F783365248DC25E62000:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 65707 Cc: Navid Afkhami X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/bioconductor.scm (r-interactivedisplay): New variable. --- gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c913232680..9c03366f8b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7734,6 +7734,50 @@ (define-public r-impute microarray data, using nearest neighbor averaging.") (license license:gpl2+))) +(define-public r-interactivedisplay + (package + (name "r-interactivedisplay") + (version "1.38.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "interactiveDisplay" version)) + (sha256 + (base32 + "1y9fdnpz1bagrwhyj8jikp2q5fd9y74j48l5z7f0s88v88sa7szl")))) + (properties `((upstream-name . "interactiveDisplay"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-biocgenerics + r-biocmanager + r-category + r-dt + r-ggplot2 + r-gridsvg + r-interactivedisplaybase + r-plyr + r-rcolorbrewer + r-reshape2 + r-shiny + r-zlibbioc + r-xml)) + (native-inputs `(("esbuild" ,esbuild) + ("r-knitr" ,r-knitr) +("js-jquery-1.9.1" +,(origin + (method url-fetch) + (uri "https://code.jquery.com/jquery-1.9.1.js") + (sha256 + (base32 + "0h4dk67yc9d0kadqxb6b33585f3x3559p6qmp70l00qwq030vn3v")))))) + (home-page "https://bioconductor.org/packages/interactiveDisplay") + (synopsis + "Package for enabling powerful shiny web displays of Bioconductor objects") + (description + "This package offers interactive Shiny displays for Bioconductor objects. +In addition, this package empower users to develop engaging visualizations +and interfaces for working with Bioconductor data.") + (license license:artistic2.0))) + (define-public r-interactivedisplaybase (package (name "r-interactivedisplaybase") base-commit: 45af7b89239d4bbdc145a5c9cc03356f31d5a20e -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Sep 15 17:25:03 2023 Received: (at 65707-done) by debbugs.gnu.org; 15 Sep 2023 21:25:03 +0000 Received: from localhost ([127.0.0.1]:44997 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qhGJC-0002IA-S6 for submit@debbugs.gnu.org; Fri, 15 Sep 2023 17:25:03 -0400 Received: from sender3-of-o59.zoho.com ([136.143.184.59]:21954) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qhGJ9-0002Hf-Ub for 65707-done@debbugs.gnu.org; Fri, 15 Sep 2023 17:25:01 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1694813089; cv=none; d=zohomail.com; s=zohoarc; b=XBwkaRVrIhCLdhhAG9APu8kWfR0sux1D/BE26fPb/HPFh8ckyXC8JAV01AJimBJtdZ32Z6GUWGWi9kyoGaJRJJ1xbM3uoWyO7piv5ve1RBBa7ppqI7JLsswyB9a2PZo+GNE4knYNoyUzJj7KwcCnZ+m8hZnDB+eEHhBKmB67g8g= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1694813089; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=BfESEH5NNB+FmSiwI/+Ho/l4tc9R2WeUK/SFtoIoGfk=; b=XbuuI0HcoSQUuNsYFgZ2Gjmk69Esv6t5haYUxsO33Z0LbHS8U0nDKtJlPp4Gd4z3y5wOzrLsJgMlVqcRYsJZ89aAv1v0IsWeK8kBvi5p8C/IZiAe3D9sN48FpRrM/YwnNEeVyJOf4+IxYeIy63ypa93X4j7ynMO3Df5YFyLC/7A= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1694813089; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=BfESEH5NNB+FmSiwI/+Ho/l4tc9R2WeUK/SFtoIoGfk=; b=Q+kCFWppRvWPOHgMqcy0sYpAgteKlOVtkq95ykKGjaaf+0M/htzkkuGJVxrYEZeH QsvK1XzO8W41mWdIQxgaIqV1wnwMdS1WidlPipUrATTgjbW7kTksNBG0/sgbPuf8dAw AAdGyH8pmwMpl1TBbp3ePAP/eUdGtPS7NnlacGpo= Received: from localhost (i5E862C81.versanet.de [94.134.44.129]) by mx.zohomail.com with SMTPS id 1694813088152861.0462595278359; Fri, 15 Sep 2023 14:24:48 -0700 (PDT) User-agent: mu4e 1.10.5; emacs 28.2 From: Ricardo Wurmus To: 65707-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-interactivedisplay. Date: Fri, 15 Sep 2023 23:23:17 +0200 Message-ID: <87y1h7xh7m.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 65707-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patch! This needed a little more work to replace the bundled JavaScript. You can see the result in commit cda20190bccf9bd55c264b1084eab8b6499c15cc. -- Ricardo From unknown Fri Jun 20 07:18:35 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. 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