GNU bug report logs - #65689
[PATCH 1/2] gnu: Add r-strawr.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#65689: closed ([PATCH 1/2] gnu: Add r-strawr.)
Date: Sat, 02 Sep 2023 09:50:02 +0000

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Your message dated Sat, 02 Sep 2023 11:48:39 +0200
with message-id <87ledodhx6.fsf <at> elephly.net>
and subject line [PATCH 1/2] gnu: Add r-strawr.
has caused the debbugs.gnu.org bug report #65689,
regarding [PATCH 1/2] gnu: Add r-strawr.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
65689: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=65689
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH 1/2] gnu: Add r-strawr.
Date: Fri, 1 Sep 2023 20:45:11 +0000

* gnu/packages/cran.scm (r-strawr): New variable.
---
 gnu/packages/cran.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4ec6b802ff..adf2d4c32a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8287,6 +8287,28 @@ (define-public r-statsexpressions
 for ggstatsplot.")
     (license license:gpl3)))
 
+(define-public r-strawr
+  (package
+    (name "r-strawr")
+    (version "0.0.91")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "strawr" version))
+              (sha256
+               (base32
+                "1nbcn20g3f3f5x9sscj3020n5h4iaphr70s90n2fz31vc4snzq2m"))))
+    (properties `((upstream-name . "strawr")))
+    (build-system r-build-system)
+    (inputs (list curl openssh openssl zlib))
+    (propagated-inputs (list r-rcpp))
+    (home-page "https://github.com/aidenlab/straw/tree/master/R")
+    (synopsis "Fast Implementation of Reading/Dump for .hic Files")
+    (description
+     "API for efficient .hic file data extraction with programmatic matrix access.
+It doesn't store the pointer data for all the matrices, only theone
+queried, and currently we are only supporting matrices.")
+    (license license:expat)))
+
 (define-public r-stringdist
   (package
     (name "r-stringdist")

base-commit: 7309da3ba64a191f074807275d8c5661a25c035c
prerequisite-patch-id: 70b98dde8ca4056fb8bd1b731716853ac2c9f0a1
-- 
2.34.1

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 65689-done <at> debbugs.gnu.org
Subject: [PATCH 1/2] gnu: Add r-strawr.
Date: Sat, 02 Sep 2023 11:48:39 +0200

Applied with minor changes.  Thank you!

-- 
Ricardo

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