From unknown Wed Jun 18 23:04:21 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#65689 <65689@debbugs.gnu.org> To: bug#65689 <65689@debbugs.gnu.org> Subject: Status: [PATCH 1/2] gnu: Add r-strawr. Reply-To: bug#65689 <65689@debbugs.gnu.org> Date: Thu, 19 Jun 2025 06:04:21 +0000 retitle 65689 [PATCH 1/2] gnu: Add r-strawr. reassign 65689 guix-patches submitter 65689 Navid Afkhami severity 65689 normal tag 65689 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Fri Sep 01 16:45:45 2023 Received: (at submit) by debbugs.gnu.org; 1 Sep 2023 20:45:45 +0000 Received: from localhost ([127.0.0.1]:34168 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcB1V-0004eQ-GR for submit@debbugs.gnu.org; Fri, 01 Sep 2023 16:45:45 -0400 Received: from lists.gnu.org ([2001:470:142::17]:34066) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcB1S-0004Lp-TA for submit@debbugs.gnu.org; Fri, 01 Sep 2023 16:45:43 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qcB1C-0005BX-T3 for guix-patches@gnu.org; Fri, 01 Sep 2023 16:45:27 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qcB19-0003vD-67 for guix-patches@gnu.org; Fri, 01 Sep 2023 16:45:26 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1693601117; x=1695415518; bh=XASeSBcassa27+4 oh+A7pJyHncy2j6b+HVvfHcvPXQ0=; b=XLEmTeeVDz4bWPuPJnernuoS09xUd6F l016nxVy68fkUJ2FRO/fy0eKgwkRhAYvPIHiVcfYDVvMn/pks9EM1AJboPaXeKaY A6IsxJ3uv8GUftSHUkhD0fbOIsi0R0Es7zRI8B5rqXVWwRqiHSkWwavAgBZzNbgy bHerD7PnknEc= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id A2B21300354 for ; Fri, 1 Sep 2023 22:45:17 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Fri, 1 Sep 2023 22:45:16 +0200 From: Navid Afkhami To: Subject: [PATCH 1/2] gnu: Add r-strawr. Date: Fri, 1 Sep 2023 20:45:11 +0000 Message-ID: <646a45304d13b4544a475fc2ce490faee83496d8.1693601111.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27850.002 X-TM-AS-Result: No-10--3.431800-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiL/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYn6iaZxcTEhaFhGAWvOYxWonVTWWiNp+v9YL/tox9XQkf5rVOs2bw4Rli+ BaqMwTNoG6eIINck1G2bWF2dUri5rR0Ysv2aMEtnjpxdo/JwVm8oioCrSMgeK7rencS+jsJiYDT IhMw3OOX0tCKdnhB58I/9UW5M5dRNp7qEhmmPgy/cUt5lc1lLgKIzdZS3ou0UWVljWYeeB5NPFI IS4hq37AoSLV66Dlv/hHeom7DGPO8LQjclm06VXugulpzY8aJD2zolIuqe0epJtCPS9HfsnH5pv Nwjv4is1SFnvT3xtg/ZXoppoXJ2l3uIZI4JiTJYQPI4HwLeaEA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.431800-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27850.002 X-TM-SNTS-SMTP: E57F4F21B63FF7643979C7E67470E4422EE67D79F64341CE6AF2D82E8A4B69992000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: Navid Afkhami X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/cran.scm (r-strawr): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4ec6b802ff..adf2d4c32a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8287,6 +8287,28 @@ (define-public r-statsexpressions for ggstatsplot.") (license license:gpl3))) +(define-public r-strawr + (package + (name "r-strawr") + (version "0.0.91") + (source (origin + (method url-fetch) + (uri (cran-uri "strawr" version)) + (sha256 + (base32 + "1nbcn20g3f3f5x9sscj3020n5h4iaphr70s90n2fz31vc4snzq2m")))) + (properties `((upstream-name . "strawr"))) + (build-system r-build-system) + (inputs (list curl openssh openssl zlib)) + (propagated-inputs (list r-rcpp)) + (home-page "https://github.com/aidenlab/straw/tree/master/R") + (synopsis "Fast Implementation of Reading/Dump for .hic Files") + (description + "API for efficient .hic file data extraction with programmatic matrix access. +It doesn't store the pointer data for all the matrices, only theone +queried, and currently we are only supporting matrices.") + (license license:expat))) + (define-public r-stringdist (package (name "r-stringdist") base-commit: 7309da3ba64a191f074807275d8c5661a25c035c prerequisite-patch-id: 70b98dde8ca4056fb8bd1b731716853ac2c9f0a1 -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sat Sep 02 05:49:14 2023 Received: (at 65689-done) by debbugs.gnu.org; 2 Sep 2023 09:49:14 +0000 Received: from localhost ([127.0.0.1]:35241 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcNFi-0007PR-CD for submit@debbugs.gnu.org; Sat, 02 Sep 2023 05:49:14 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21141) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcNFf-0007PG-78 for 65689-done@debbugs.gnu.org; Sat, 02 Sep 2023 05:49:12 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1693648138; cv=none; d=zohomail.com; s=zohoarc; b=liDKbFdRxC3ZD3lT9wF1TVQy2MgLEzwHBFlIDdR59HtV1ypt9i2k9Eom4SGdPb4gxQg+B01StYcKYuE38GEsHE3k0CWR7D1ImwErmI+ddQS28sLy9BU2MPtrrQdTxlbrk/Bhtia37hEjbYyKLWoH7h4VEU3eoNY3hz36FO5vNUA= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1693648138; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=wPFizuxISDdXLE8qIgIHpP1t2Iuoc4tkFYgjbCYQvcU=; b=fqZqi2GbHUYVLsxVtFRyKTLvqcOXqSs9N6sefbGOHLrnI7HpyMylFNIRtXf+dXKeInWHQxKBnR6brM6fzUpJL9QocBekl7DqzzL+Wqs07CvAg6km/LKzzayCqV+Do1NQtopkuopYw/HCLIw8Pcw1Wy1SeRZ8r3IBilo4uFLtWO8= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1693648138; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=wPFizuxISDdXLE8qIgIHpP1t2Iuoc4tkFYgjbCYQvcU=; b=ZX4xZ3r9dO7XeX/EehN+8rVwxgtfOmEApx9jBMAOPT82Fm0kCby4NUlYX58ztwfZ C3g433hdtao6/ISu+FIX5e67KI2154f1sNvOZvhNHa1Hx5oAVPw4vMfsZaE1Ll9ma/g rJb8sBiQqjhETaJU8Jj/+hw0lYI1uVw2SfdSHLys= Received: from localhost (113-111-142-46.pool.kielnet.net [46.142.111.113]) by mx.zohomail.com with SMTPS id 1693648137112447.30429253507816; Sat, 2 Sep 2023 02:48:57 -0700 (PDT) User-agent: mu4e 1.10.5; emacs 28.2 From: Ricardo Wurmus To: 65689-done@debbugs.gnu.org Subject: [PATCH 1/2] gnu: Add r-strawr. Date: Sat, 02 Sep 2023 11:48:39 +0200 Message-ID: <87ledodhx6.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 65689-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied with minor changes. Thank you! -- Ricardo From unknown Wed Jun 18 23:04:21 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 30 Sep 2023 11:24:34 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator