GNU bug report logs - #65687
[PATCH] gnu: r-chromunity: Update to (git-version 0.0.2 revision commit).

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#65687: closed ([PATCH] gnu: r-chromunity: Update to
 (git-version 0.0.2 revision commit).)
Date: Sat, 02 Sep 2023 09:06:02 +0000

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Your message dated Sat, 02 Sep 2023 11:03:28 +0200
with message-id <87pm31c5ea.fsf <at> elephly.net>
and subject line [PATCH] gnu: r-chromunity: Update
has caused the debbugs.gnu.org bug report #65687,
regarding [PATCH] gnu: r-chromunity: Update to (git-version 0.0.2 revision commit).
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
65687: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=65687
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: r-chromunity: Update to (git-version 0.0.2 revision
 commit).
Date: Fri, 1 Sep 2023 20:03:34 +0000

* gnu/packages/bioinformatics.scm (r-chromunity): Update to (git-version 0.0.2 revision commit).
[propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38.
---
 gnu/packages/bioinformatics.scm | 38 ++++++++++++++++-----------------
 1 file changed, 19 insertions(+), 19 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2669942438..f1a0307d3b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9791,11 +9791,11 @@ (define-public r-skitools
       (license license:expat))))
 
 (define-public r-chromunity
-  (let ((commit "09fce8bc12cb84b45a6ea25bf8db6e5b75113d4f")
+  (let ((commit "712e56ccba64e8881dbb203546379a5c3c639bb2")
         (revision "1"))
     (package
       (name "r-chromunity")
-      (version (git-version "0.0.1" revision commit))
+      (version (git-version "0.0.2" revision commit))
       (source (origin
                 (method git-fetch)
                 (uri (git-reference
@@ -9804,25 +9804,25 @@ (define-public r-chromunity
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "0lp0h614k8fq6h9gpbylk4chh7q6w4qda8lx03ajrpppxmg7al2d"))))
+                  "0sdja11l7bg5rmcbp2cl226cq9qrj3r8kq5lg49zbin83hya27vh"))))
       (properties `((upstream-name . "chromunity")))
       (build-system r-build-system)
-      (propagated-inputs
-       (list r-arrow
-             r-biocgenerics
-             r-data-table
-             r-gchain
-             r-genomicranges
-             r-gutils
-             r-igraph
-             r-magrittr
-             r-mass
-             r-matrix
-             r-pbmcapply
-             r-plyr
-             r-r6
-             r-skitools
-             r-zoo))
+      (propagated-inputs (list r-arrow
+                               r-biocgenerics
+                               r-bsgenome-hsapiens-ucsc-hg38
+                               r-data-table
+                               r-gchain
+                               r-genomicranges
+                               r-gutils
+                               r-igraph
+                               r-magrittr
+                               r-mass
+                               r-matrix
+                               r-pbmcapply
+                               r-plyr
+                               r-r6
+                               r-skitools
+                               r-zoo))
       (home-page "https://github.com/mskilab/chromunity")
       (synopsis "Discovery of communities in Pore-C concatemers")
       (description "This is a package for the discovery of communities in

base-commit: a88da4199c30291a3155ff1b24b4b5ab3d7c40c0
-- 
2.34.1

[Message part 3 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 65687-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: r-chromunity: Update
Date: Sat, 02 Sep 2023 11:03:28 +0200

Applied with minor changes:

- removed r-skitools because that’s no longer needed according to the
  importer.
- changed indentation.
- changed commit message to mention the effective version string

Thank you!

-- 
Ricardo

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