From unknown Thu Jun 19 14:18:40 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#65687 <65687@debbugs.gnu.org> To: bug#65687 <65687@debbugs.gnu.org> Subject: Status: [PATCH] gnu: r-chromunity: Update to (git-version 0.0.2 revision commit). Reply-To: bug#65687 <65687@debbugs.gnu.org> Date: Thu, 19 Jun 2025 21:18:40 +0000 retitle 65687 [PATCH] gnu: r-chromunity: Update to (git-version 0.0.2 revis= ion commit). reassign 65687 guix-patches submitter 65687 Navid Afkhami severity 65687 normal tag 65687 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Fri Sep 01 16:04:24 2023 Received: (at submit) by debbugs.gnu.org; 1 Sep 2023 20:04:25 +0000 Received: from localhost ([127.0.0.1]:34088 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcANU-0007Jp-HC for submit@debbugs.gnu.org; Fri, 01 Sep 2023 16:04:24 -0400 Received: from lists.gnu.org ([2001:470:142::17]:37098) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcANS-0007Jd-7G for submit@debbugs.gnu.org; Fri, 01 Sep 2023 16:04:23 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qcAND-0003Ar-8X for guix-patches@gnu.org; Fri, 01 Sep 2023 16:04:07 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qcAN9-0000RN-Am for guix-patches@gnu.org; Fri, 01 Sep 2023 16:04:07 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1693598623; x=1695413024; bh=sTb7Bnw5clwbZR5 MB/eCCO9mwCFPf9+RTJljiEdANHY=; b=o0Kn1WCOgKFocK6n+QjMcDR2S16Ap5l +XfGbBwTY9VlIDBEfueDTmEjwE/rxo6AeW7I5jVevEXyopOHYNfUR47WkOB7RUMB 9G69vYA47uQbip9DhfVN7dF/UPLMmmhnSpkUSosn4oH0/fTtSVLurj7BU/dqyGWW y2CpAOhlmeM4= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 74FBDA026C for ; Fri, 1 Sep 2023 22:03:43 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Fri, 1 Sep 2023 22:03:42 +0200 From: Navid Afkhami To: Subject: [PATCH] gnu: r-chromunity: Update to (git-version 0.0.2 revision commit). Date: Fri, 1 Sep 2023 20:03:34 +0000 Message-ID: <7271d3a14849828ed560847be5bb5635fe769a27.1693598614.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27850.002 X-TM-AS-Result: No-10--4.524400-5.000000 X-TMASE-MatchedRID: cPHQg9IhLGoexiL4/gRNNVCxqE4whnXlyiKgKtIyB4rozDhGeQC9Er8F Hrw7frluf146W0iUu2tvedD3CYSjHdG5/ZtK3riSnVTWWiNp+v8XjfR3d0weRoq1ysJFea53Iy/ Fg1mRnqLjtXFLFuP+NX6VxxWFgkHXo8WMkQWv6iXBcIE78YqRWvcUt5lc1lLgKIzdZS3ou0V9G+ mJkM+enitTzUBUtwxXLU6bIBrggk4wKnf9N7av/UcP4R8iKEv5+5wbYtxfP+Ox5j2WUUvuafQwp OA4/Sbmu2GbEf8GY6Q1SFnvT3xtg/ZXoppoXJ2l3uIZI4JiTJYQPI4HwLeaEA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.524400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27850.002 X-TM-SNTS-SMTP: 6E359C8256AFD8AF970E96F81AD58672E7A5818B5C5562E107A33D9E0D3913A32000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: Navid Afkhami X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioinformatics.scm (r-chromunity): Update to (git-version 0.0.2 revision commit). [propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38. --- gnu/packages/bioinformatics.scm | 38 ++++++++++++++++----------------- 1 file changed, 19 insertions(+), 19 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2669942438..f1a0307d3b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9791,11 +9791,11 @@ (define-public r-skitools (license license:expat)))) (define-public r-chromunity - (let ((commit "09fce8bc12cb84b45a6ea25bf8db6e5b75113d4f") + (let ((commit "712e56ccba64e8881dbb203546379a5c3c639bb2") (revision "1")) (package (name "r-chromunity") - (version (git-version "0.0.1" revision commit)) + (version (git-version "0.0.2" revision commit)) (source (origin (method git-fetch) (uri (git-reference @@ -9804,25 +9804,25 @@ (define-public r-chromunity (file-name (git-file-name name version)) (sha256 (base32 - "0lp0h614k8fq6h9gpbylk4chh7q6w4qda8lx03ajrpppxmg7al2d")))) + "0sdja11l7bg5rmcbp2cl226cq9qrj3r8kq5lg49zbin83hya27vh")))) (properties `((upstream-name . "chromunity"))) (build-system r-build-system) - (propagated-inputs - (list r-arrow - r-biocgenerics - r-data-table - r-gchain - r-genomicranges - r-gutils - r-igraph - r-magrittr - r-mass - r-matrix - r-pbmcapply - r-plyr - r-r6 - r-skitools - r-zoo)) + (propagated-inputs (list r-arrow + r-biocgenerics + r-bsgenome-hsapiens-ucsc-hg38 + r-data-table + r-gchain + r-genomicranges + r-gutils + r-igraph + r-magrittr + r-mass + r-matrix + r-pbmcapply + r-plyr + r-r6 + r-skitools + r-zoo)) (home-page "https://github.com/mskilab/chromunity") (synopsis "Discovery of communities in Pore-C concatemers") (description "This is a package for the discovery of communities in base-commit: a88da4199c30291a3155ff1b24b4b5ab3d7c40c0 -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sat Sep 02 05:05:02 2023 Received: (at 65687-done) by debbugs.gnu.org; 2 Sep 2023 09:05:02 +0000 Received: from localhost ([127.0.0.1]:35154 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcMYv-0006Cz-Ox for submit@debbugs.gnu.org; Sat, 02 Sep 2023 05:05:02 -0400 Received: from sender3-of-o58.zoho.com ([136.143.184.58]:21807) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcMYt-0006Cp-Qu for 65687-done@debbugs.gnu.org; Sat, 02 Sep 2023 05:05:00 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1693645488; cv=none; d=zohomail.com; s=zohoarc; b=B7ZYtC4XQ4nBhxRtnAGXrlpWu2Cf5R8kJD2cGhOhsWFFB0tj7ZzOK+eKVrivUljE3Z87Co5JMQ58fDmyj5CmzAadS/Na7PNLweaHfg7ZKLwkBGH4SKWF6PmquTW1ZyAt6vfDEBM8biW9xMEzkt4C19TvJFBBNWTEKPO5JBWzuOc= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1693645488; h=Content-Type:Content-Transfer-Encoding:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=oVUf8VvYh39UL9bf3sBLiPt+djw6kfH6WZbEJcNtl64=; b=TAMR+MybM0J2edq4AIfA7Q1fsqJxV4RAUJof1iITHZofhJo83y11dXTcv28AhxrKlTxZxuyfzK4u4wkTI887I6oG6vuePBxBRedQYDfIB70waSrLu/85YiHr2gIcAaQzawOvDYAT//qYJ+DFOsgfrwhVOWT/+Cat5UqJ9eq7Uvg= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1693645488; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To:Cc; bh=oVUf8VvYh39UL9bf3sBLiPt+djw6kfH6WZbEJcNtl64=; b=HPxSjumijJFH87REyiM48p8jCY2QhZtBLcpI3b86lYemjCSEok4cvonUbY8VUGUG XSiT0U802qJYuwCdRBGOIBFNwJnSKqvi955bj4MbudF+Lcfq1KQ+29nlmxHaGQDf6cW ybJDDUlyqYK2OQ+2UoP91vyMEo+VSLYG8BbfDMoE= Received: from localhost (113-111-142-46.pool.kielnet.net [46.142.111.113]) by mx.zohomail.com with SMTPS id 1693645487757759.2951552165989; Sat, 2 Sep 2023 02:04:47 -0700 (PDT) User-agent: mu4e 1.10.5; emacs 28.2 From: Ricardo Wurmus To: 65687-done@debbugs.gnu.org Subject: [PATCH] gnu: r-chromunity: Update Date: Sat, 02 Sep 2023 11:03:28 +0200 Message-ID: <87pm31c5ea.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 65687-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied with minor changes: - removed r-skitools because that=E2=80=99s no longer needed according to t= he importer. - changed indentation. - changed commit message to mention the effective version string Thank you! --=20 Ricardo From unknown Thu Jun 19 14:18:40 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 30 Sep 2023 11:24:32 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator