From unknown Fri Jun 20 07:29:04 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#65529] [PATCH 2/2] gnu: Add r-oompabase. Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 25 Aug 2023 11:07:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 65529 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65529@debbugs.gnu.org Cc: Navid Afkhami X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.169296162220339 (code B ref -1); Fri, 25 Aug 2023 11:07:03 +0000 Received: (at submit) by debbugs.gnu.org; 25 Aug 2023 11:07:02 +0000 Received: from localhost ([127.0.0.1]:39427 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qZUeb-0005Ho-Q3 for submit@debbugs.gnu.org; Fri, 25 Aug 2023 07:07:02 -0400 Received: from lists.gnu.org ([2001:470:142::17]:34876) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qZUeV-0005HH-9S for submit@debbugs.gnu.org; Fri, 25 Aug 2023 07:06:57 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qZUeI-00062n-BP for guix-patches@gnu.org; Fri, 25 Aug 2023 07:06:43 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qZUeD-0005mH-QJ for guix-patches@gnu.org; Fri, 25 Aug 2023 07:06:42 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1692961576; x=1694775977; bh=yGnjgRRZNhuZqp5678g66SWHs6tCHPP9yAwua3g5Pr0=; b=Ke9DT0cqStd9 em75VWiRhAVJmjuOTHHhg0r6knbp3tVQp7cMbrAzacv3MmvcffFUyUyXDiRjq/Z4 1czC5KcqY/oMxivDfG7z3zDvKKu0dMJSJ1RKqp8f7HxEYRh1Q3dzoOeWaMgO14EW XdjpdXhYE6UyUQJnuVuCqdnwswssSIQ= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 9556BA0311 for ; Fri, 25 Aug 2023 13:06:16 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Fri, 25 Aug 2023 13:06:16 +0200 From: Navid Afkhami Date: Fri, 25 Aug 2023 11:06:07 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 In-Reply-To: <101858d305defcbe2f111fc2b93bd02c6d982499.1692961567.git.navid.afkhami@mdc-berlin.de> References: <101858d305defcbe2f111fc2b93bd02c6d982499.1692961567.git.navid.afkhami@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27834.007 X-TM-AS-Result: No-10--2.827600-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEPWi 8sPaLZvCRRa406V/YwyBUGewL2YXt8Z8zsjIitoJ71Wx2uUbPLfkwFzTzcgzhF/TJVF6hUztcmM mAcpqutN7+f6uAUZWb4F1g/cG+RBqOEt+E9fCvHvdCok3ibXlQeuLFZZYlisfHxPMjOKY7A9wK7 mZ44aKbi8z+bJ2nm9UKrauXd3MZDUal568aygjl16kL9ij2EnifkBSn+KKMZgWddWDpxaorAapt bcdc47SG6JN3XfkWWctnp72a5k4HW0AnsQuFMjsQVgPBdX2Z6XbN3r2X9GkNejH2uqisuoiPjuO i3VGqWcK6EH4ezZD5cVG5HMgWgqoftwZ3X11IV0= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.827600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27834.007 X-TM-SNTS-SMTP: DB54635BAF3090B7C248FB756563717F156E666CF0CFC91C13E9B355999CD9212000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/cran.scm (r-oompabase): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 65e472860c..2a6318626d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2304,6 +2304,27 @@ (define-public r-oompadata to enhance existing BioConductor packages.") (license license:asl2.0))) +(define-public r-oompabase + (package + (name "r-oompabase") + (version "3.2.9") + (source (origin + (method url-fetch) + (uri (cran-uri "oompaBase" version)) + (sha256 + (base32 + "1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl")))) + (properties `((upstream-name . "oompaBase"))) + (build-system r-build-system) + (propagated-inputs (list r-cluster)) + (home-page "http://oompa.r-forge.r-project.org/") + (synopsis "Class unions, matrix operations, and color schemes for OOMPA") + (description + "This Package preloads class unions for defining/loading core OOMPA tools. +It also includes vectorized operations for row-by-row means, variances, and +t-tests. Finally, it provides new colorschemes.") + (license license:asl2.0))) + (define-public r-orgmassspecr (package (name "r-orgmassspecr") -- 2.34.1 From unknown Fri Jun 20 07:29:04 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Navid Afkhami Subject: bug#65529: closed ([PATCH 2/2] gnu: Add r-oompabase.) Message-ID: References: <87v8czeeu4.fsf@elephly.net> X-Gnu-PR-Message: they-closed 65529 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 65529@debbugs.gnu.org Date: Mon, 28 Aug 2023 08:45:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1693212302-12521-1" This is a multi-part message in MIME format... ------------=_1693212302-12521-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #65529: [PATCH 2/2] gnu: Add r-oompabase. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 65529@debbugs.gnu.org. --=20 65529: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D65529 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1693212302-12521-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 65529-done) by debbugs.gnu.org; 28 Aug 2023 08:44:41 +0000 Received: from localhost ([127.0.0.1]:46924 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qaXrU-0003FI-NA for submit@debbugs.gnu.org; Mon, 28 Aug 2023 04:44:40 -0400 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21046) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qaXrQ-0003F7-7v for 65529-done@debbugs.gnu.org; Mon, 28 Aug 2023 04:44:38 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1693212268; cv=none; d=zohomail.com; s=zohoarc; b=Mw2NPamxvO4CSpi6gpUiPVBnbjwp4mLzo+s1Fn7WMg2H1u1NepP9+hPErmQRGXiI/67X7sevfCMrnvUGC4nGMwxG37D/f8AXTq0YUVPzMjGXD1Ioj/HGQ1x3z0tw+/y9+URwyoDhMkYoPHhh+/wQcyMKQJfBedXJVxIv59/NXJY= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1693212268; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=fVR08EtXpEluvazYZAM+c6J3toO//CGe3GjC+TyOvM7Rap/Fo192jEYC68v9GtNpqgOvFTfwGkESENI/3KcV6o+Yty5sDeE0jTY8SBqSq2ZOZvSlqHQDfrG0P5VR46SDFkbWm4P+WFWgc64EBKOjW9FQxPPgUaPAf3b9OvHfPG4= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1693212268; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=hyczYnJkYTtg1ha3QJqiqC5akHq7NpQjhpQ87Jn6KQmSZ+TwSBuBa/IkEA2XbfiO phgnCDcJ+c2nCCNQEPVP8YSrd0/ha4tkhF2TKHVpVNsbfjWotEvhsnqnfYRLu5qpJL5 74u2Ctr/ItJqKYqU1t/mqwi+NMgJc3ja4TXQ7y6Q= Received: from localhost (113-111-142-46.pool.kielnet.net [46.142.111.113]) by mx.zohomail.com with SMTPS id 169321226643943.72366775491514; Mon, 28 Aug 2023 01:44:26 -0700 (PDT) User-agent: mu4e 1.10.5; emacs 28.2 From: Ricardo Wurmus To: 65529-done@debbugs.gnu.org Subject: [PATCH 2/2] gnu: Add r-oompabase. Date: Mon, 28 Aug 2023 10:44:06 +0200 Message-ID: <87v8czeeu4.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 65529-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thank you! -- Ricardo ------------=_1693212302-12521-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 25 Aug 2023 11:07:02 +0000 Received: from localhost ([127.0.0.1]:39427 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qZUeb-0005Ho-Q3 for submit@debbugs.gnu.org; Fri, 25 Aug 2023 07:07:02 -0400 Received: from lists.gnu.org ([2001:470:142::17]:34876) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qZUeV-0005HH-9S for submit@debbugs.gnu.org; Fri, 25 Aug 2023 07:06:57 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qZUeI-00062n-BP for guix-patches@gnu.org; Fri, 25 Aug 2023 07:06:43 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qZUeD-0005mH-QJ for guix-patches@gnu.org; Fri, 25 Aug 2023 07:06:42 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1692961576; x=1694775977; bh=yGnjgRRZNhuZqp5678g66SWHs6tCHPP9yAwua3g5Pr0=; b=Ke9DT0cqStd9 em75VWiRhAVJmjuOTHHhg0r6knbp3tVQp7cMbrAzacv3MmvcffFUyUyXDiRjq/Z4 1czC5KcqY/oMxivDfG7z3zDvKKu0dMJSJ1RKqp8f7HxEYRh1Q3dzoOeWaMgO14EW XdjpdXhYE6UyUQJnuVuCqdnwswssSIQ= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 9556BA0311 for ; Fri, 25 Aug 2023 13:06:16 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Fri, 25 Aug 2023 13:06:16 +0200 From: Navid Afkhami To: Subject: [PATCH 2/2] gnu: Add r-oompabase. Date: Fri, 25 Aug 2023 11:06:07 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 In-Reply-To: <101858d305defcbe2f111fc2b93bd02c6d982499.1692961567.git.navid.afkhami@mdc-berlin.de> References: <101858d305defcbe2f111fc2b93bd02c6d982499.1692961567.git.navid.afkhami@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27834.007 X-TM-AS-Result: No-10--2.827600-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEPWi 8sPaLZvCRRa406V/YwyBUGewL2YXt8Z8zsjIitoJ71Wx2uUbPLfkwFzTzcgzhF/TJVF6hUztcmM mAcpqutN7+f6uAUZWb4F1g/cG+RBqOEt+E9fCvHvdCok3ibXlQeuLFZZYlisfHxPMjOKY7A9wK7 mZ44aKbi8z+bJ2nm9UKrauXd3MZDUal568aygjl16kL9ij2EnifkBSn+KKMZgWddWDpxaorAapt bcdc47SG6JN3XfkWWctnp72a5k4HW0AnsQuFMjsQVgPBdX2Z6XbN3r2X9GkNejH2uqisuoiPjuO i3VGqWcK6EH4ezZD5cVG5HMgWgqoftwZ3X11IV0= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.827600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27834.007 X-TM-SNTS-SMTP: DB54635BAF3090B7C248FB756563717F156E666CF0CFC91C13E9B355999CD9212000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: Navid Afkhami X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/cran.scm (r-oompabase): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 65e472860c..2a6318626d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2304,6 +2304,27 @@ (define-public r-oompadata to enhance existing BioConductor packages.") (license license:asl2.0))) +(define-public r-oompabase + (package + (name "r-oompabase") + (version "3.2.9") + (source (origin + (method url-fetch) + (uri (cran-uri "oompaBase" version)) + (sha256 + (base32 + "1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl")))) + (properties `((upstream-name . "oompaBase"))) + (build-system r-build-system) + (propagated-inputs (list r-cluster)) + (home-page "http://oompa.r-forge.r-project.org/") + (synopsis "Class unions, matrix operations, and color schemes for OOMPA") + (description + "This Package preloads class unions for defining/loading core OOMPA tools. +It also includes vectorized operations for row-by-row means, variances, and +t-tests. Finally, it provides new colorschemes.") + (license license:asl2.0))) + (define-public r-orgmassspecr (package (name "r-orgmassspecr") -- 2.34.1 ------------=_1693212302-12521-1--