From unknown Fri Jun 20 20:10:00 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#65528] [PATCH 1/2] gnu: Add r-oompadata. Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 25 Aug 2023 11:07:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 65528 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65528@debbugs.gnu.org Cc: Navid Afkhami X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.169296161720314 (code B ref -1); Fri, 25 Aug 2023 11:07:02 +0000 Received: (at submit) by debbugs.gnu.org; 25 Aug 2023 11:06:57 +0000 Received: from localhost ([127.0.0.1]:39425 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qZUeX-0005HU-9O for submit@debbugs.gnu.org; Fri, 25 Aug 2023 07:06:57 -0400 Received: from lists.gnu.org ([2001:470:142::17]:34866) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qZUeV-0005HF-2y for submit@debbugs.gnu.org; Fri, 25 Aug 2023 07:06:56 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qZUeH-0005yn-EQ for guix-patches@gnu.org; Fri, 25 Aug 2023 07:06:42 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qZUeD-0005mI-QG for guix-patches@gnu.org; Fri, 25 Aug 2023 07:06:41 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1692961572; x=1694775973; bh=AcWjOsQuQFBzuD0 5HCO+uSnPgTeUdVM6g23Q5e/rroo=; b=nb7h6CDG+rxxRs3WbhZOg3femFzGSFE VkevC0ANeY2NU5eSVgdE6BKy0h9CDAWAedeYLedKaL85D129i5+BeB0xt5g/p5tq MpnIeCaiefw34gupSOdaCJnD/a+PiwU1HMv9KDx0dKZLUwaD/lOAshNUGVaclpLs TTy9HDve8P/g= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id C8492300392 for ; Fri, 25 Aug 2023 13:06:12 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Fri, 25 Aug 2023 13:06:11 +0200 From: Navid Afkhami Date: Fri, 25 Aug 2023 11:06:06 +0000 Message-ID: <101858d305defcbe2f111fc2b93bd02c6d982499.1692961567.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27834.007 X-TM-AS-Result: No-10--0.254400-5.000000 X-TMASE-MatchedRID: NGDYxnKYxb3/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEOHX C6tRk611ZRUjkVFROF6mO9JfpHloPipe4ofkluPsa87CDXaKRVKFzNNPDc6umDP3WYNhkszl/nm YTGYx9zKV1345AtQfBcCrMSR+lfKo8f+64gLLEwI5ipSXnwRcM5q7DiIZuJv4RZrOmBLNtw/Jw6 G9NdOWi5KQhRnJRBQntWKNR2epAFaCWMXx8ovaCeLzNWBegCW2U9w4XVXDWCYLbigRnpKlKTpcQ TtiHDgWlqp8taK1jTda/TdV0HfOr4DsDZKPMxibqB8rBpQM3DZx4zjpiZA7h9GJWnInu++3ppO3 MTTQ2jLxeSOEAYycH+jQ6DKkztnHt0oQIuj+SVeFEVfQxs3N6ZDgmt8QekvB5maCeNv/LIzVGQd qwsDiEg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.254400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27834.007 X-TM-SNTS-SMTP: 8239D2F00EECBFFD9FBBDFC192539969878014553ED8FAE862F3D41501F280432000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/cran.scm (r-oompadata): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 223d1d3a3d..65e472860c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2281,6 +2281,29 @@ (define-public r-oenb @url{https://www.oenb.at/en/Statistics/User-Defined-Tables/webservice.html}.") (license license:gpl2+))) +(define-public r-oompadata + (package + (name "r-oompadata") + (version "3.1.3") + (source (origin + (method url-fetch) + (uri (cran-uri "oompaData" version)) + (sha256 + (base32 + "0gdp7bghgpz3q0h06w8r926x7wkpcvkpyf0v5qfi1qixbpvk5fdf")))) + (properties `((upstream-name . "oompaData"))) + (build-system r-build-system) + (home-page "http://oompa.r-forge.r-project.org/") + (synopsis "Data to illustrate OOMPA algorithms") + (description + "OOMPA offers R packages for gene expression and proteomics analysis. +OOMPA uses S4 classes to construct object-oriented tools with a consistent +user interface. All higher level analysis tools in OOMPA are compatible +with the eSet classes defined in BioConductor. The lower level processing +tools offer an alternative to parts of BioConductor, but can also be used +to enhance existing BioConductor packages.") + (license license:asl2.0))) + (define-public r-orgmassspecr (package (name "r-orgmassspecr") base-commit: 5c8e8dff607da710ce13a506e2dc42e98ee96737 -- 2.34.1 From unknown Fri Jun 20 20:10:00 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Navid Afkhami Subject: bug#65528: closed ([PATCH 1/2] gnu: Add r-oompadata.) Message-ID: References: <874jkjfu6i.fsf@elephly.net> <101858d305defcbe2f111fc2b93bd02c6d982499.1692961567.git.navid.afkhami@mdc-berlin.de> X-Gnu-PR-Message: they-closed 65528 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 65528@debbugs.gnu.org Date: Mon, 28 Aug 2023 08:28:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1693211282-10860-1" This is a multi-part message in MIME format... ------------=_1693211282-10860-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #65528: [PATCH 1/2] gnu: Add r-oompadata. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 65528@debbugs.gnu.org. --=20 65528: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D65528 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1693211282-10860-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 65528-done) by debbugs.gnu.org; 28 Aug 2023 08:27:51 +0000 Received: from localhost ([127.0.0.1]:46888 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qaXbC-0002on-UN for submit@debbugs.gnu.org; Mon, 28 Aug 2023 04:27:51 -0400 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21062) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qaXb7-0002oc-Tk for 65528-done@debbugs.gnu.org; Mon, 28 Aug 2023 04:27:49 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1693211256; cv=none; d=zohomail.com; s=zohoarc; b=CUCVPvFLm1L/tBWDRS5b+wyir2eLcMacGl/TbtmL99kYkAVSt2rvtscb9VOEZcb0tu8qmH2zmaX8VsJ3s2ijyDKxG1Zm3gcDQXf2yoWJEAVcBU9advmSXBLN6uojmGp8O3pXrB2qKnUFZg0J0UzMGtNRAt9YRfZPFCspMz8zmcU= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1693211256; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=WHAzVWXvWmxZJ7JoJIbLDvcSlXoIseXKTACgJ/6mPtg=; b=oHpGe72gk3JnD2mKmE6i4TzOKfww56YqXTuqRynowOPvV2tAriht8EnDJKQ0OM72+ffqgJVI6cXdg9xteVsZ+deOjrk67WMhRiFIzIBawAyCX+iQpNQzIrns1Cd2U+gNMtz4CMXrjIUCZNzofX1TMBEhkQQrTfGvd9J6vu7JWmY= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1693211256; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=WHAzVWXvWmxZJ7JoJIbLDvcSlXoIseXKTACgJ/6mPtg=; b=dbZ7qD4COV90JNqi0OVHWWNJIfEhjdaFY2JdCrPpd4KKgqrf65CURZo8ONB3wIYC DDzbJJrkS9E5tmVL5J6hwyddnwFjMl23Io7nWWvIDXzGnQitnSvdKPFvwKxDVIfiZgn FlTlUz93u2viVx760AKZ2wWVXVTelLWUQq/Tbn3M= Received: from localhost (113-111-142-46.pool.kielnet.net [46.142.111.113]) by mx.zohomail.com with SMTPS id 1693211255989348.4816935617911; Mon, 28 Aug 2023 01:27:35 -0700 (PDT) User-agent: mu4e 1.10.5; emacs 28.2 From: Ricardo Wurmus To: 65528-done@debbugs.gnu.org Subject: [PATCH 1/2] gnu: Add r-oompadata. Date: Mon, 28 Aug 2023 10:27:12 +0200 Message-ID: <874jkjfu6i.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 65528-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thank you for the patch! -- Ricardo ------------=_1693211282-10860-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 25 Aug 2023 11:06:57 +0000 Received: from localhost ([127.0.0.1]:39425 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qZUeX-0005HU-9O for submit@debbugs.gnu.org; Fri, 25 Aug 2023 07:06:57 -0400 Received: from lists.gnu.org ([2001:470:142::17]:34866) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qZUeV-0005HF-2y for submit@debbugs.gnu.org; Fri, 25 Aug 2023 07:06:56 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qZUeH-0005yn-EQ for guix-patches@gnu.org; Fri, 25 Aug 2023 07:06:42 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qZUeD-0005mI-QG for guix-patches@gnu.org; Fri, 25 Aug 2023 07:06:41 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1692961572; x=1694775973; bh=AcWjOsQuQFBzuD0 5HCO+uSnPgTeUdVM6g23Q5e/rroo=; b=nb7h6CDG+rxxRs3WbhZOg3femFzGSFE VkevC0ANeY2NU5eSVgdE6BKy0h9CDAWAedeYLedKaL85D129i5+BeB0xt5g/p5tq MpnIeCaiefw34gupSOdaCJnD/a+PiwU1HMv9KDx0dKZLUwaD/lOAshNUGVaclpLs TTy9HDve8P/g= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id C8492300392 for ; Fri, 25 Aug 2023 13:06:12 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Fri, 25 Aug 2023 13:06:11 +0200 From: Navid Afkhami To: Subject: [PATCH 1/2] gnu: Add r-oompadata. Date: Fri, 25 Aug 2023 11:06:06 +0000 Message-ID: <101858d305defcbe2f111fc2b93bd02c6d982499.1692961567.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27834.007 X-TM-AS-Result: No-10--0.254400-5.000000 X-TMASE-MatchedRID: NGDYxnKYxb3/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEOHX C6tRk611ZRUjkVFROF6mO9JfpHloPipe4ofkluPsa87CDXaKRVKFzNNPDc6umDP3WYNhkszl/nm YTGYx9zKV1345AtQfBcCrMSR+lfKo8f+64gLLEwI5ipSXnwRcM5q7DiIZuJv4RZrOmBLNtw/Jw6 G9NdOWi5KQhRnJRBQntWKNR2epAFaCWMXx8ovaCeLzNWBegCW2U9w4XVXDWCYLbigRnpKlKTpcQ TtiHDgWlqp8taK1jTda/TdV0HfOr4DsDZKPMxibqB8rBpQM3DZx4zjpiZA7h9GJWnInu++3ppO3 MTTQ2jLxeSOEAYycH+jQ6DKkztnHt0oQIuj+SVeFEVfQxs3N6ZDgmt8QekvB5maCeNv/LIzVGQd qwsDiEg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.254400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27834.007 X-TM-SNTS-SMTP: 8239D2F00EECBFFD9FBBDFC192539969878014553ED8FAE862F3D41501F280432000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: Navid Afkhami X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/cran.scm (r-oompadata): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 223d1d3a3d..65e472860c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2281,6 +2281,29 @@ (define-public r-oenb @url{https://www.oenb.at/en/Statistics/User-Defined-Tables/webservice.html}.") (license license:gpl2+))) +(define-public r-oompadata + (package + (name "r-oompadata") + (version "3.1.3") + (source (origin + (method url-fetch) + (uri (cran-uri "oompaData" version)) + (sha256 + (base32 + "0gdp7bghgpz3q0h06w8r926x7wkpcvkpyf0v5qfi1qixbpvk5fdf")))) + (properties `((upstream-name . "oompaData"))) + (build-system r-build-system) + (home-page "http://oompa.r-forge.r-project.org/") + (synopsis "Data to illustrate OOMPA algorithms") + (description + "OOMPA offers R packages for gene expression and proteomics analysis. +OOMPA uses S4 classes to construct object-oriented tools with a consistent +user interface. All higher level analysis tools in OOMPA are compatible +with the eSet classes defined in BioConductor. The lower level processing +tools offer an alternative to parts of BioConductor, but can also be used +to enhance existing BioConductor packages.") + (license license:asl2.0))) + (define-public r-orgmassspecr (package (name "r-orgmassspecr") base-commit: 5c8e8dff607da710ce13a506e2dc42e98ee96737 -- 2.34.1 ------------=_1693211282-10860-1--