GNU bug report logs - #65500
[PATCH 2/2] gnu: Add r-mousegastrulationdata.

Previous Next

Full log

View this message in rfc822 format

From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#65500: closed ([PATCH 2/2] gnu: Add r-mousegastrulationdata.)
Date: Mon, 28 Aug 2023 08:22:03 +0000

[Message part 1 (text/plain, inline)]

Your message dated Mon, 28 Aug 2023 10:20:56 +0200
with message-id <878r9vfugd.fsf <at> elephly.net>
and subject line [PATCH 2/2] gnu: Add r-mousegastrulationdata.
has caused the debbugs.gnu.org bug report #65500,
regarding [PATCH 2/2] gnu: Add r-mousegastrulationdata.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
65500: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=65500
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH 2/2] gnu: Add r-mousegastrulationdata.
Date: Thu, 24 Aug 2023 13:28:28 +0000

* gnu/packages/bioconductor.scm (r-mousegastrulationdata): New variable.
---
 gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6204173277..f3671e5cca 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8009,6 +8009,37 @@ (define-public r-motifrg
 throughput genetic sequencing data sets using regression methods.")
     (license license:artistic2.0)))
 
+(define-public r-mousegastrulationdata
+  (package
+    (name "r-mousegastrulationdata")
+    (version "1.14.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "MouseGastrulationData" version
+                                     'experiment))
+              (sha256
+               (base32
+                "155kci5isq7mlbvv8mdl2jjpafm3pbv1likhls70aa746spr1h17"))))
+    (properties `((upstream-name . "MouseGastrulationData")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-biocgenerics
+                             r-bumpymatrix
+                             r-experimenthub
+                             r-s4vectors
+                             r-singlecellexperiment
+                             r-spatialexperiment
+                             r-summarizedexperiment))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/MarioniLab/MouseGastrulationData")
+    (synopsis
+     "Single-Cell omics data across mouse gastrulation and early organogenesis")
+    (description
+     "This package provides processed and raw count data for single-cell RNA sequencing.
+in addition, this package offers single-cell ATAC-seq, and @code{seqFISH}
+(spatial transcriptomic) experiments performed along a timecourse of mouse
+gastrulation and early organogenesis.")
+    (license license:gpl3)))
+
 (define-public r-muscat
   (package
     (name "r-muscat")
-- 
2.34.1

[Message part 3 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 65500-done <at> debbugs.gnu.org
Subject: [PATCH 2/2] gnu: Add r-mousegastrulationdata.
Date: Mon, 28 Aug 2023 10:20:56 +0200

Applied with minor changes:

- location in the file, next to other experiment packages
- formatting of the description.

-- 
Ricardo

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.