GNU bug report logs - #64566
[PATCH 0/3] gnu: Add glnemo2.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: guix-patches <at> gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 0/3] gnu: Add glnemo2.
Date: Tue, 11 Jul 2023 00:37:04 +0100

Hi Guix!

2 more astro packages for this week, passed lint and build on x86_64 and
aarch64 systems:

> ./pre-inst-env guix build glnemo2 ccfits --system=aarch64-linux
> /gnu/store/rna5r8sw8wlzvf6xbv2k1kbw37m7jk3q-ccfits-2.6
> /gnu/store/4xh1yjaxhxlc87pdmv1ljlcyhz1vb18k-glnemo2-1.21.0
> ./pre-inst-env guix build glnemo2 ccfits
> /gnu/store/fwfwd0yz8zv36pcammcc1zanks5nzj8w-ccfits-2.6
> /gnu/store/w4k64walqdwy9zdz0pqdxk38bk5c48qd-glnemo2-1.21.0

Sharlatan Hellseher (3):
  gnu: cfitsio: Download source over HTTPS.
  gnu: Add ccfits.
  gnu: Add glnemo2.

 gnu/packages/astronomy.scm | 91 +++++++++++++++++++++++++++++++++++++-
 1 file changed, 90 insertions(+), 1 deletion(-)


base-commit: 67e22584faaa558c2a5834a5013d77660ec45e85
-- 
2.40.1

Message #8 received at 64566 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 64566 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 1/3] gnu: cfitsio: Download source over HTTPS.
Date: Tue, 11 Jul 2023 00:39:18 +0100

* gnu/packages/astronomy.scm (cfitsio)[source]: Use HTTPS.
---
 gnu/packages/astronomy.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d3f3711bd1..f402b13537 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -428,7 +428,7 @@ (define-public cfitsio
      (origin
        (method url-fetch)
        (uri (string-append
-             "http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/"
+             "https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/"
              "cfitsio-" version ".tar.gz"))
        (sha256
         (base32 "128qsv2q0f0g714ahlsixiikvvbwxi9bg9q9pcr5cd3f7wdkv9gb"))))
-- 
2.40.1

Message #11 received at 64566 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 64566 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 2/3] gnu: Add ccfits.
Date: Tue, 11 Jul 2023 00:39:19 +0100

* gnu/packages/astronomy.scm (ccfits): New variable.
---
 gnu/packages/astronomy.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index f402b13537..5d261370b8 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -420,6 +420,30 @@ (define-public casacore
 @url{https://casa.nrao.edu/, CASA} is now built on top of Casacore.")
     (license license:gpl2+)))
 
+(define-public ccfits
+  (package
+    (name "ccfits")
+    (version "2.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://heasarc.gsfc.nasa.gov/docs/software/fitsio/ccfits/"
+             "CCfits-" version ".tar.gz"))
+       (sha256
+        (base32 "04l6na8vr5xadz3rbx62as79x1ch4994vbb625kx0dz5czdkkd1b"))))
+    (build-system cmake-build-system)
+    (inputs (list cfitsio))
+    (home-page "https://heasarc.gsfc.nasa.gov/docs/software/fitsio/ccfits/")
+    (synopsis "C++ interface to the CFITSIO")
+    (description
+     "CCfits is an object oriented interface to the cfitsio library.  It is
+designed to make the capabilities of cfitsio available to programmers working in
+C++.  It is written in ANSI C++ and implemented using the C++ Standard Library
+with namespaces, exception handling, and member template functions.")
+    (license (license:non-copyleft "file://License.txt"
+                                   "See License.txt in the distribution."))))
+
 (define-public cfitsio
   (package
     (name "cfitsio")
-- 
2.40.1

Message #14 received at 64566 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 64566 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 3/3] gnu: Add glnemo2.
Date: Tue, 11 Jul 2023 00:39:20 +0100

* gnu/packages/astronomy.scm (glnemo2): New variable.
---
 gnu/packages/astronomy.scm | 65 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 65 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5d261370b8..3d27f1a60e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -60,6 +60,7 @@ (define-module (gnu packages astronomy)
   #:use-module (gnu packages multiprecision)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages netpbm)
+  #:use-module (gnu packages onc-rpc)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages photo)
   #:use-module (gnu packages pkg-config)
@@ -757,6 +758,70 @@ (define-public weightwatcher
 astronomical image-processing packages like Drizzle, Swarp or SExtractor.")
     (license license:gpl3+)))
 
+(define-public glnemo2
+  (package
+    (name "glnemo2")
+    (version "1.21.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://gitlab.lam.fr/jclamber/glnemo2")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1jmmxszh8d2jmfghig36nhykff345mqnpssfa64d0r7l9cnfp3cn"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list
+      #:tests? #f        ; No test target
+      #:configure-flags #~(list "CPPFLAGS=-fcommon")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'patch-libraries-paths
+            (lambda _
+              (substitute* "CMakeLists.txt"
+                ;; There is some not straightforward logic on how to set
+                ;; installation prefix for the project, inherit it from the
+                ;; build-system default flags.
+                (("CMAKE_INSTALL_PREFIX  \"/usr\"")
+                 (string-append "CMAKE_INSTALL_PREFIX"))
+                (("/usr/include/CCfits")
+                 (string-append
+                  #$(this-package-input "ccfits") "/include/CCfits"))
+                (("/usr/include/tirpc")
+                 (string-append
+                  #$(this-package-input "libtirpc") "/include/tirpc"))
+                ;; It tries to detect library in 2 "predictable" paths,
+                ;; required during link phase.
+                (("/usr/lib64/libtirpc.so")
+                 (string-append
+                  #$(this-package-input "libtirpc") "/lib/libtirpc.so"))))))))
+    (inputs
+     (list ccfits
+           cfitsio
+           glm
+           glu
+           hdf5
+           libtirpc
+           qtbase-5
+           zlib))
+    (home-page "https://projets.lam.fr/projects/unsio/wiki")
+    (synopsis "3D interactive visualization program for nbody like particles")
+    (description
+     "GLNEMO2 is an interactive 3D visualization program which displays
+particles positions of the different components (gas, stars, disk, dark mater
+halo, bulge) of an N-body snapshot.   It's a very useful tool for everybody
+running N-body simulations from isolated galaxies to cosmological simulations.
+It can show quickly a lot of information about data by revealing shapes, dense
+areas, formation of structures such as spirals arms, bars, peanuts or clumps
+of galaxies.   Glnemo2 has been designed to meet the requirements of the user,
+with simplicity in mind, easy to install, easy to use with an interactive and
+responsive graphical user interface (based on QT 5.X API), powerful with a
+fast 3D engine (OPenGL and GLSL), and generic with the possibility to load
+different kinds of input files.")
+    (license license:cecill)))
+
 (define-public gnuastro
   (package
     (name "gnuastro")
-- 
2.40.1

Message #19 received at 64566-done <at> debbugs.gnu.org (full text, mbox):

From: Andreas Enge <andreas <at> enge.fr>
To: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Cc: 64566-done <at> debbugs.gnu.org, Efraim Flashner <efraim <at> flashner.co.il>,
 Eric Bavier <bavier <at> posteo.net>
Subject: Re: [bug#64566] [PATCH 0/3] gnu: Add glnemo2.
Date: Wed, 26 Jul 2023 15:52:24 +0200

Hello,

Am Tue, Jul 11, 2023 at 12:37:04AM +0100 schrieb Sharlatan Hellseher:
> 2 more astro packages for this week, passed lint and build on x86_64 and
> aarch64 systems:

all pushed and closing the bug, thanks!

For glnemo2, I made the description more neutral.
There was a string-append without effect, which I have changed like this:
               (substitute* "CMakeLists.txt"
                 ;; There is some not straightforward logic on how to set
                 ;; the installation prefix for the project; inherit it
                 ;; from the build-system default flags.
                 (("CMAKE_INSTALL_PREFIX  \"/usr\"")
-                 (string-append "CMAKE_INSTALL_PREFIX"))
+                 "CMAKE_INSTALL_PREFIX")

Hopefully this works, or was there anything missing to append?

In any case, it builds and I can start it.

Andreas

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