GNU bug report logs - #64448
[PATCH 0/2] Fix hdf5-1.14 wrappers and remove generated source files from all hdf5 versions.

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Package: guix-patches;

Reported by: David Elsing <david.elsing <at> posteo.net>

Date: Mon, 3 Jul 2023 21:59:02 UTC

Severity: normal

Tags: patch

Done: David Elsing <david.elsing <at> posteo.net>

Bug is archived. No further changes may be made.

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: Andreas Enge <andreas <at> enge.fr>
Cc: David Elsing <david.elsing <at> posteo.net>, 64448 <at> debbugs.gnu.org
Subject: [bug#64448] [PATCH 0/2] Fix hdf5-1.14 wrappers and remove generated source files from all hdf5 versions.
Date: Wed, 26 Mar 2025 18:29:39 +0100
Hi Andreas,

> I have submitted two new issues with the goal of getting closer 
> to
> removing hdf5 <at> 1.8 and hdf5 <at> 1.10, see
>    https://issues.guix.gnu.org/77285
>    https://issues.guix.gnu.org/77287
>
> Ricardo, since you seem to be interested in this package, your 
> input
> there would be very welcome. And here also; after the proposed 
> removal
> of h5check (which, I just see, does not even build any more), 
> the only
> remaining direct dependency of hdf5 <at> 1.8 is
>    java-cisd-jhdf5
> and "guix refresh -l hdf5 <at> 1.8" lists
>    pigx-sars-cov-2 <at> 0.0.9 trinityrnaseq <at> 2.13.2 pigx <at> 0.0.3
> as leaf packages.

On the python-team branch the only user of java-cisd-jhdf5 is 
fastqc, which should be updated to a more recent version.

-- 
Ricardo




This bug report was last modified 43 days ago.

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