Subject: bug#64438: closed ([PATCH] gnu: Add python-gatspy.)

From: [email-masked] (GNU bug Tracking System)
Date: Mon, 03 Jul 2023 15:48:01 +0000

Your bug report

#64438: [PATCH] gnu: Add python-gatspy.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
64438: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=64438
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: [PATCH] gnu: Add python-gatspy.
From: Ricardo Wurmus <[email-masked]>
To: [email-masked]
Date: Mon, 03 Jul 2023 17:46:21 +0200
List-Id: <debbugs-submit.debbugs.gnu.org>

Thanks for the patch!

I noticed that some of the tests only failed because we didn’t have
astroML.  So I packaged it and added it to the inputs, so now only two
tests are disabled.

Pushed it to the master branch with commit
07f083e94f4f5c5f53e4d8aa644de2064a6256c9.

-- 
Ricardo

Subject: [PATCH] gnu: Add python-gatspy.
From: Navid Afkhami <[email-masked]>
To: <[email-masked]>
Cc: Navid Afkhami <[email-masked]>
Date: Mon, 3 Jul 2023 15:08:11 +0000
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/bioinformatics.scm (python-gatspy): New variable.
---
 gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0f3f64b98f..47ea11fa53 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3477,6 +3477,34 @@ (define-public python-pysam
 also includes an interface for tabix.")
     (license license:expat)))
 
+(define-public python-gatspy
+  (package
+    (name "python-gatspy")
+    (version "0.3")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "gatspy" version))
+              (sha256
+               (base32
+                "1gw2z6x8nikvnw2gkdl70gr81cwczd1pd7v8ry2kjn6k4kssrfav"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list #:test-flags '(list "-k"
+                               ;; These tests require internet access
+                               (string-append "not test_download_data.py"
+                                " and not test_rrlyrae.py"
+                                " and not test_rrlyrae_lightcurves"
+                                " and not test_rrlyrae_generated.py"
+                                " and not test_lomb_scargle.py"
+                                " and not test_supersmoother.py"
+                                " and not test_templates.py"))))
+    (propagated-inputs (list python-numpy python-scipy))
+    (native-inputs (list python-pytest python-nose python-setuptools-scm))
+    (home-page "https://github.com/astroml/gatspy")
+    (synopsis "General tools for astronomical time series in Python")
+    (description "General tools for astronomical time series in Python")
+    (license license:bsd-2)))
+
 (define-public python-twobitreader
   (package
     (name "python-twobitreader")

base-commit: 29ccd7cac93da290e1d0466a1d33748ad4ccbf08
prerequisite-patch-id: 2e072dec7e75b2dcc08789c562b9c3f8491fc05f
-- 
2.34.1