From debbugs-submit-bounces@debbugs.gnu.org Mon Jul 03 11:08:39 2023 Received: (at submit) by debbugs.gnu.org; 3 Jul 2023 15:08:39 +0000 Received: from localhost ([127.0.0.1]:34258 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qGLAN-00040j-6J for submit@debbugs.gnu.org; Mon, 03 Jul 2023 11:08:39 -0400 Received: from lists.gnu.org ([209.51.188.17]:44636) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qGLAH-00040T-Dh for submit@debbugs.gnu.org; Mon, 03 Jul 2023 11:08:37 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qGLAC-0004sh-Ij for guix-patches@gnu.org; Mon, 03 Jul 2023 11:08:29 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qGLA8-0005AR-3e for guix-patches@gnu.org; Mon, 03 Jul 2023 11:08:27 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1688396898; x=1690211299; bh=4PbEWNKHUblOKRG SEtg/AoGIbMKwpVBaSurIrXlK9K8=; b=l3wNqRUHxxkrqwOZ5mYmJqz0og/O0Hj 2Rth57MEWIBByFl6uh97/e0EgNpWzC6Keq2RCNEfgY75KpQ+Koqa7/tFGHg6unI5 /P/nPjCQwgxiwYMXujppx/nLMF0mlpVaRumnoA+yjBzEBvpMo6VX322md7OzlY3Y 4GfPTRE1p62Q= Received-SPF: Pass (mailfrom) identity=mailfrom; client-ip=141.80.113.62; helo=sw-it-p-ex4.mdc-berlin.net; envelope-from=navid.afkhami@mdc-berlin.de; receiver= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 5E311A013A for ; Mon, 3 Jul 2023 17:08:18 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.27; Mon, 3 Jul 2023 17:08:17 +0200 From: Navid Afkhami To: Subject: [PATCH] gnu: Add python-gatspy. Date: Mon, 3 Jul 2023 15:08:11 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27730.000 X-TM-AS-Result: No-10--8.830200-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2t6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VIPc XuILVCbaRRa406V/YwyBUGewL2YXt5r9F4bPByvNPKN38CLPK0Fb4dXBMpIkhrxrAG2Om7p2te+ ocL7MBZfjflb9+9xiNa8DjUKIOK5Y4Mu+9Uvd4HjGL//8mlodA5Slv/9klkDiD2veI3/hwm9KfR F/WYdhbn0tCKdnhB589yM15V5aWpj6C0ePs7A07YFInLyeDAoZY0ICnG/Lnp5qAWL1pbx3Ri9fx S7HQ3ZolFpeBoXUHpShgLRzA45JPQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--8.830200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27730.000 X-TM-SNTS-SMTP: 265F51CE6F55814DE94EDD0E910F28946F197971F15A9DB8EB86ED66E0F8D1462000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: Navid Afkhami X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioinformatics.scm (python-gatspy): New variable. --- gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0f3f64b98f..47ea11fa53 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3477,6 +3477,34 @@ (define-public python-pysam also includes an interface for tabix.") (license license:expat))) +(define-public python-gatspy + (package + (name "python-gatspy") + (version "0.3") + (source (origin + (method url-fetch) + (uri (pypi-uri "gatspy" version)) + (sha256 + (base32 + "1gw2z6x8nikvnw2gkdl70gr81cwczd1pd7v8ry2kjn6k4kssrfav")))) + (build-system pyproject-build-system) + (arguments + (list #:test-flags '(list "-k" + ;; These tests require internet access + (string-append "not test_download_data.py" + " and not test_rrlyrae.py" + " and not test_rrlyrae_lightcurves" + " and not test_rrlyrae_generated.py" + " and not test_lomb_scargle.py" + " and not test_supersmoother.py" + " and not test_templates.py")))) + (propagated-inputs (list python-numpy python-scipy)) + (native-inputs (list python-pytest python-nose python-setuptools-scm)) + (home-page "https://github.com/astroml/gatspy") + (synopsis "General tools for astronomical time series in Python") + (description "General tools for astronomical time series in Python") + (license license:bsd-2))) + (define-public python-twobitreader (package (name "python-twobitreader") base-commit: 29ccd7cac93da290e1d0466a1d33748ad4ccbf08 prerequisite-patch-id: 2e072dec7e75b2dcc08789c562b9c3f8491fc05f -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Mon Jul 03 11:47:39 2023 Received: (at 64438-done) by debbugs.gnu.org; 3 Jul 2023 15:47:39 +0000 Received: from localhost ([127.0.0.1]:34296 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qGLm6-00054o-S3 for submit@debbugs.gnu.org; Mon, 03 Jul 2023 11:47:39 -0400 Received: from sender3-of-o58.zoho.com ([136.143.184.58]:21849) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qGLm1-000549-99 for 64438-done@debbugs.gnu.org; Mon, 03 Jul 2023 11:47:38 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1688399250; cv=none; d=zohomail.com; s=zohoarc; b=NpGKxmVNC4/8xLuG4Pt2PWW7zwzznq0++4lGG5iXeU2KT+O6OanfKNNwxZg7zKRl+t20mxEWEy4gbfSk9wtnXPZHu9nNuESaCoqxlg22loCVrxcfzaZZl17+psxFWRwNhF1KVe8MVpKvu1539cx1ptDO58GbPYIqdl2RFPEc78c= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1688399250; h=Content-Type:Content-Transfer-Encoding:Date:From:MIME-Version:Message-ID:Subject:To; bh=RdepySfcMafg5xxuEeDJig1g/fA02gMehLI8YDuPkH4=; b=JxXyD8LKy8fsAsKmuYleyU9Wetdx8TYmmA2zjmTdRUiZhmHjzmmvg6U1S3ZBLdiSWCj3XpEXmTHCMbL+/caTw8nztk1NMpkjHZfRbKyW29eywvzfeCQQ1tj6roHNFrzappwkupAKrc4v7skyzs3+KhpByA0ji49XiO9JTkoybhc= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1688399250; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To:Cc; bh=RdepySfcMafg5xxuEeDJig1g/fA02gMehLI8YDuPkH4=; b=ccKUyz4niUSg74c8Omiq8bg6CUEArnYqZZdQszHgmL7Ve6+ZFsE/wG0lMqM6dp4+ tXQv+mFkwC/56IXqbPGuRsjOy7Dtd1hdKQi07TPAgHo5lhSZDIQe92GwvDmngfKNr/R 7e6PncQMz2RXPimcwpcATi6kA76FCohyxHLwOC1Q= Received: from localhost (45-110-142-46.pool.kielnet.net [46.142.110.45]) by mx.zohomail.com with SMTPS id 1688399248691353.01530815858337; Mon, 3 Jul 2023 08:47:28 -0700 (PDT) User-agent: mu4e 1.10.3; emacs 28.2 From: Ricardo Wurmus To: 64438-done@debbugs.gnu.org Subject: [PATCH] gnu: Add python-gatspy. Date: Mon, 03 Jul 2023 17:46:21 +0200 Message-ID: <875y71t2sy.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 64438-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patch! I noticed that some of the tests only failed because we didn=E2=80=99t have astroML. So I packaged it and added it to the inputs, so now only two tests are disabled. Pushed it to the master branch with commit 07f083e94f4f5c5f53e4d8aa644de2064a6256c9. --=20 Ricardo From unknown Sat Jun 21 05:15:28 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Tue, 01 Aug 2023 11:24:07 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator