From unknown Sun Aug 17 09:12:19 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#64435 <64435@debbugs.gnu.org> To: bug#64435 <64435@debbugs.gnu.org> Subject: Status: [PATCH] gnu: Add r-dtmm. Reply-To: bug#64435 <64435@debbugs.gnu.org> Date: Sun, 17 Aug 2025 16:12:19 +0000 retitle 64435 [PATCH] gnu: Add r-dtmm. reassign 64435 guix-patches submitter 64435 Navid Afkhami severity 64435 normal tag 64435 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Mon Jul 03 07:28:07 2023 Received: (at submit) by debbugs.gnu.org; 3 Jul 2023 11:28:08 +0000 Received: from localhost ([127.0.0.1]:33264 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qGHix-0003sV-Hh for submit@debbugs.gnu.org; Mon, 03 Jul 2023 07:28:07 -0400 Received: from lists.gnu.org ([209.51.188.17]:57932) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qGHit-0003sM-SA for submit@debbugs.gnu.org; Mon, 03 Jul 2023 07:28:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qGHis-0002EO-2e for guix-patches@gnu.org; Mon, 03 Jul 2023 07:28:02 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qGHip-00023j-Lv for guix-patches@gnu.org; Mon, 03 Jul 2023 07:28:01 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1688383659; x=1690198060; bh=ffqu4bUJ6LjHh5I KraLoIAuBv9jX76ihq4fC1bPLFBc=; b=LvuGSvtJaKWU1CYMA+UHR9OW2Qnc8pc hiOo2j+gY9r8yh5wsrzcCd6E2zlPQNQ3vSEWx8d9hhZemDff6izKCzDVg7+2T69p A9btErQ5SLOxfjqqnhnWbgkn1GWfwUNI83UP+zkKT8UmL5jKW/a8WRJlsa7fjHJc A/7KT705kqXI= Received-SPF: Pass (mailfrom) identity=mailfrom; client-ip=141.80.113.62; helo=sw-it-p-ex4.mdc-berlin.net; envelope-from=navid.afkhami@mdc-berlin.de; receiver= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 3FF94A0142 for ; Mon, 3 Jul 2023 13:27:39 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.27; Mon, 3 Jul 2023 13:27:38 +0200 From: Navid Afkhami To: Subject: [PATCH] gnu: Add r-dtmm. Date: Mon, 3 Jul 2023 11:27:32 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27728.006 X-TM-AS-Result: No-10--3.578400-5.000000 X-TMASE-MatchedRID: /+von0vPuFF6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VICu qghmtWfXXt3JNptef3p4Zvg4N7yewiq+GZ9ZHxIhuW77/y896sj4qCLIu0mtIEJ1hMCC63pYgtp dYIvYniqtuu6YxSgT/xq+GDzhZYNlTvHzGcGqiIKrm7DrUlmNkIAy6p60ZV62fJ5/bZ6npdjKay T/BQTiGsc/LkuEUo/UdRTQi8J0bOXSWGqphtcTyuXjyiBpJtyuhcZzyG+3dxUWZslGLgr9l5QoR JuCs+9uY8VLkWRx1XwbC+DHTVMnt1htMybBTWabeFv61dDRnYf0c5qUjgqLKvYlQeU3xrH0XtGJ m2N/3yI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.578400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27728.006 X-TM-SNTS-SMTP: 53B9D9052AD87EBF4F58092846E86A62F441AFCD06E27061A8CDA96ED109CA212000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit Cc: Navid Afkhami X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioinformatics.scm (r-dtmm): New variable. --- gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f3ea86544d..0f3f64b98f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14644,6 +14644,30 @@ (define-public r-disgenet2r to retrieve data from DisGeNET v6.0 (Jan, 2019).") (license license:expat)))) +(define-public r-dtmm + (let ((commit "3a553b1e17d27d90a496d2e23e98e5dfe4abc266") + (revision "1")) + (package + (name "r-dtmm") + (version (git-version "0.1.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/MaStatLab/DTMM") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "19279wafqfs9gk9489f8zsp52qcdb0mkxgvqszq4i733ckr2mmkk")))) + (properties `((upstream-name . "DTMM"))) + (build-system r-build-system) + (propagated-inputs (list r-ape r-rcpp r-rcpparmadillo)) + (home-page "https://github.com/MaStatLab/DTMM") + (synopsis "Dirichlet-tree multinomial mixtures") + (description + "Dirichlet-tree multinomial mixtures for clustering microbiome compositions.") + (license license:cc0)))) + (define-public r-dyngen (package (name "r-dyngen") base-commit: 29ccd7cac93da290e1d0466a1d33748ad4ccbf08 -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Mon Jul 03 07:44:13 2023 Received: (at 64435-done) by debbugs.gnu.org; 3 Jul 2023 11:44:13 +0000 Received: from localhost ([127.0.0.1]:33272 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qGHyX-0006nJ-Id for submit@debbugs.gnu.org; Mon, 03 Jul 2023 07:44:13 -0400 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21091) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qGHyV-0006nA-1N for 64435-done@debbugs.gnu.org; Mon, 03 Jul 2023 07:44:12 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1688384648; cv=none; d=zohomail.com; s=zohoarc; b=K9KlyPyMQoqqtZTaLegk2B3roq6OX4cQqIkDRQD4xZFNnSoSLpFtvaX/TDb8qhfAIUcEaED6egvAnHhL79I14VM+FJUbj1XgmSMUgx52m/BhCZfquhgvTS54XsfUNu3aoEzJZf/iHOE4HSGZqW0JR8fVvO86+JQEZ66j2G0B1yU= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1688384648; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=gXvjjvGjDFypuSSbsaj1aY+HOAJlmcWpH9rRNX+5s2U=; b=RNvOuPdw+1W+zjfqDLqunWy6agIUZolGLRWykReZ+4z3WdwTSrvNFLaqe0/iZbfV8vOEo1feH87I1uRW90ahcklt1xDk4ie7YvWOEWMitSElfSxNwwYKM0TJLSuqh2F8F6hpaJV9IDbFRt13TwKu5znHgbZxXHCK5IT/UAhOVrE= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1688384648; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=gXvjjvGjDFypuSSbsaj1aY+HOAJlmcWpH9rRNX+5s2U=; b=QRlGg3oUVulmxW9n0Or2FY5JnaREQTqmPv0UcFQvRiJ2SCf3CoVK3K6VCNjYvE9f zGNtzFu8dr5fMIvCoU8Zt8f1rPns3RNiYdXqNcnm20tyCYv8UAgkKzm1t3rqKVp0SbI +0zNLOGXA5VChT35WvruPEaqP8dA0y+L2+tt41ds= Received: from localhost (45-110-142-46.pool.kielnet.net [46.142.110.45]) by mx.zohomail.com with SMTPS id 1688384647475900.0267274119296; Mon, 3 Jul 2023 04:44:07 -0700 (PDT) User-agent: mu4e 1.10.3; emacs 28.2 From: Ricardo Wurmus To: 64435-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-dtmm. Date: Mon, 03 Jul 2023 13:43:09 +0200 Message-ID: <87mt0dte2j.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 64435-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi Navid, thank you for the patch! I applied it and pushed it to Guix with commit 669f0eaed6310233295fbd0a077afc9ce054c6ab after expanding on the description a little to turn it into a complete sentence. -- Ricardo From unknown Sun Aug 17 09:12:19 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. 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