GNU bug report logs -
#64201
[PATCH 00/19] gnu: monthly astronomy packages update
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bug#64201; Package
guix-patches.
(Wed, 21 Jun 2023 06:29:01 GMT)
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Acknowledgement sent
to
Sharlatan Hellseher <sharlatanus <at> gmail.com>:
New bug report received and forwarded. Copy sent to
andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org.
(Wed, 21 Jun 2023 06:29:01 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
Hi Guix,
I'm about to keep the pace with updating (gnu package astronomy) monthly where
there is an easy win with just updating version and hash.
Some other packages which can be updated need more time and I don't want them
to block the flow, I'll prepare them while this issue is in review.
Here is the first portion where update took less efforts.
o block the flow, I'll prepare them while this issue is in review.
> ./pre-inst-env guix build $(./pre-inst-env guix refresh --list-dependent sextractor python-photutils calceph calcmysky libxisf splash python-astropy python-ccdproc python-cdflib python-drms python-fitsio python-pyerfa python-reproject python-stcal python-stdatamodels python-sunpy python-synphot python-astroalign | awk -F: '{print $2}')
> /gnu/store/z9s8nr3vm6yyp43kggkb39q1gmvrkwcr-python-jwst-1.10.2
> /gnu/store/3hgr6kk5qavqh550q359ldv2djgv9gak-python-sunpy-5.0.0
> /gnu/store/zijm4ac5xnqirymnbx64jfy12jjhi69f-python-astroalign-2.4.2
> /gnu/store/cjv9pj2q5321fkgfsbygzs59n6rj06ph-python-poliastro-0.17.0
> /gnu/store/195cm9x8biczq485kml0nkrl4ly62rqr-python-regions-0.7
Sharlatan Hellseher (20):
gnu: sextractor: Update to 2.28.0, fix build.
gnu: python-photutils: Update to 1.8.0.
gnu: calceph: Update to 3.5.2.
gnu: calcmysky: Update to 0.3.1.
gnu: libxisf: Update to 0.2.8.
gnu: splash: Update to 3.8.2.
gnu: python-astropy: Update to 5.3.
gnu: python-ccdproc: Update to 2.4.1.
gnu: python-cdflib: Update to 1.0.5.
gnu: python-drms: Update to 0.6.4.
gnu: python-fitsio: Update to 1.1.9.
gnu: python-fitsio: Enable tests.
gnu: python-pyerfa: Update to 2.0.0.3.
gnu: python-pyerfa: Fix tests.
gnu: python-reproject: Update to 0.11.0.
gnu: python-stcal: Update to 1.3.8.
gnu: python-stdatamodels: Update to 1.6.0.
gnu: python-sunpy: Update to 5.0.0.
gnu: python-synphot: Update to 1.2.1.
gnu: python-astroalign: Fix build.
gnu/packages/astronomy.scm | 227 +++++++++++++++++++++++--------------
1 file changed, 139 insertions(+), 88 deletions(-)
base-commit: e4087930f3ad60918689be5f4bca4ce3e22429f5
--
2.40.1
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bug#64201; Package
guix-patches.
(Wed, 21 Jun 2023 06:35:02 GMT)
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Message #8 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (sextractor): Update to 2.28.0, fix build.
[arguments]: Use G-expressions, add configure flags for CFitsio
detection.
[inputs]: Remove labels. Add cfitsio.
---
gnu/packages/astronomy.scm | 34 +++++++++++++++++++---------------
1 file changed, 19 insertions(+), 15 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index cdb6750f09..787ca01491 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -747,7 +747,7 @@ (define-public phd2
(define-public sextractor
(package
(name "sextractor")
- (version "2.25.0")
+ (version "2.28.0")
(source
(origin
(method git-fetch)
@@ -756,29 +756,33 @@ (define-public sextractor
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "0q69n3nyal57h3ik2xirwzrxzljrwy9ivwraxzv9566vi3n4z5mw"))))
+ (base32 "15v7brjiraj2rdyxiidcgb58b3dqzdd363j31cjrfqhd1wc8ii5j"))))
(build-system gnu-build-system)
;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing
;; due to missing shared library which required on configure phase. Switch
;; build to use `openblas' instead. It requires FFTW with single precision
;; `fftwf'.
(arguments
- `(#:configure-flags
- (list
- "--enable-openblas"
- (string-append
- "--with-openblas-libdir=" (assoc-ref %build-inputs "openblas") "/lib")
- (string-append
- "--with-openblas-incdir=" (assoc-ref %build-inputs "openblas") "/include")
- (string-append
- "--with-fftw-libdir=" (assoc-ref %build-inputs "fftw") "/lib")
- (string-append
- "--with-fftw-incdir=" (assoc-ref %build-inputs "fftw") "/include"))))
+ (list
+ #:configure-flags
+ #~(list
+ "--enable-openblas"
+ (string-append "--with-cfitsio-incdir="
+ #$(this-package-input "cfitsio") "/include")
+ (string-append "--with-cfitsio-libdir="
+ #$(this-package-input "cfitsio") "/lib")
+ (string-append "--with-fftw-incdir="
+ #$(this-package-input "fftwf") "/include")
+ (string-append "--with-fftw-libdir="
+ #$(this-package-input "fftwf") "/lib")
+ (string-append "--with-openblas-incdir="
+ #$(this-package-input "openblas") "/include")
+ (string-append "--with-openblas-libdir="
+ #$(this-package-input "openblas") "/lib"))))
(native-inputs
(list autoconf automake libtool))
(inputs
- `(("openblas" ,openblas)
- ("fftw" ,fftwf)))
+ (list cfitsio fftwf openblas))
(home-page "https://www.astromatic.net/software/sextractor")
(synopsis "Extract catalogs of sources from astronomical images")
(description
--
2.40.1
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bug#64201; Package
guix-patches.
(Wed, 21 Jun 2023 06:35:02 GMT)
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Message #11 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-photutils): Update to
1.8.0. Activate more options.
[build-system]: Swap to python-build-system.
[arguments]: Use G-expressions. Rename the phase before check
'writable-compiler to 'build-extensions to reflect it's purpose, add
new step in phase building extensions for testing.
[propagated-inputs]: Add python-bottleneck, python-gwcs,
python-matplotlib, python-scikit-image, python-scikit-learn,
python-scipy, python-shapely, python-tqdm
[native-inputs]: Remove python-pytest-runner. Add
python-semantic-version.
---
gnu/packages/astronomy.scm | 44 +++++++++++++++++++++++++++-----------
1 file changed, 31 insertions(+), 13 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 787ca01491..16debb93a0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -55,6 +55,7 @@ (define-module (gnu packages astronomy)
#:use-module (gnu packages libevent)
#:use-module (gnu packages libusb)
#:use-module (gnu packages lua)
+ #:use-module (gnu packages machine-learning)
#:use-module (gnu packages maths)
#:use-module (gnu packages multiprecision)
#:use-module (gnu packages ncurses)
@@ -1701,30 +1702,47 @@ (define-public python-mpl-animators
(define-public python-photutils
(package
(name "python-photutils")
- (version "1.7.0")
+ (version "1.8.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "photutils" version))
(sha256
- (base32 "1bq4ma402lpa5d6l85awlc23kasxf40nq8hgi3iyrilnfikan0jz"))))
- (build-system python-build-system)
+ (base32 "07khld3la1zwxd36kal6rglgkji4sd65lk4jc3khk0glb5v3kkrc"))))
+ (build-system pyproject-build-system)
(arguments
- `(#:test-target "pytest"
- #:phases
- (modify-phases %standard-phases
- ;; This file is opened in both install and check phases.
- (add-before 'install 'writable-compiler
- (lambda _ (make-file-writable "photutils/_compiler.c")))
- (add-before 'check 'writable-compiler
- (lambda _ (make-file-writable "photutils/_compiler.c"))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'install 'writable-compiler
+ (lambda _
+ (make-file-writable "photutils/_compiler.c")))
+ (add-before 'check 'build-extensions
+ (lambda _
+ ;; Cython extensions have to be built before running
+ ;; the tests. If it's not build it fails with error:
+ ;;
+ ;; ModuleNotFoundError: No module named
+ ;; 'photutils.geometry.circular_overlap'
+ (make-file-writable "photutils/_compiler.c")
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
(propagated-inputs
- (list python-astropy python-numpy))
+ (list python-astropy
+ python-bottleneck
+ python-gwcs
+ python-matplotlib
+ python-numpy
+ ; python-resterio : Not packed yet
+ python-scikit-image
+ python-scikit-learn
+ python-scipy
+ python-shapely
+ python-tqdm))
(native-inputs
(list python-cython
python-extension-helpers
python-pytest-astropy
- python-pytest-runner
+ python-semantic-version
python-setuptools-scm))
(home-page "https://github.com/astropy/photutils")
(synopsis "Source detection and photometry")
--
2.40.1
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andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
guix-patches.
(Wed, 21 Jun 2023 06:35:03 GMT)
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Message #14 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (calceph): Update to 3.5.2.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 16debb93a0..3ff4356a61 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -181,7 +181,7 @@ (define-public aocommon
(define-public calceph
(package
(name "calceph")
- (version "3.5.1")
+ (version "3.5.2")
(source
(origin
(method url-fetch)
@@ -189,7 +189,7 @@ (define-public calceph
"https://www.imcce.fr/content/medias/recherche/equipes/asd/calceph/calceph-"
version ".tar.gz"))
(sha256
- (base32 "078wn773pwf4pg9m0h0l00g4aq744pq1rb6kz6plgdpzp3hhpk1k"))))
+ (base32 "1rnjlaiii4j0agbj4k242p212bqqmqdqa0lni6c3bnhgfnrbjfp4"))))
(build-system gnu-build-system)
(native-inputs
(list gfortran))
--
2.40.1
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bug#64201; Package
guix-patches.
(Wed, 21 Jun 2023 06:35:03 GMT)
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Message #17 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (libxisf): Update to 0.2.8.
---
gnu/packages/astronomy.scm | 6 ++----
1 file changed, 2 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 2bae404d18..e1020bf23e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2571,9 +2571,7 @@ (define-public libpasastro
(define-public libxisf
(package
(name "libxisf")
- ;; TODO: v0.2.2 (current latest) failed to build on configure phase, issue
- ;; was open directly with author as he hosts source on seflhosted gitea.
- (version "0.2.1")
+ (version "0.2.8")
(source
(origin
(method git-fetch)
@@ -2582,7 +2580,7 @@ (define-public libxisf
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0fz9mmj1nz5v7hlr53q8na7khadfn1hm0d1gfpzzw3167bqpy2xv"))))
+ (base32 "1j2bg53hrr2yc55qa6549vcpj7qjnwmxjcdgc98w3ygnrjy7n7v0"))))
(build-system cmake-build-system)
(arguments
(list #:configure-flags #~(list "-DUSE_BUNDLED_LIBS=OFF")))
--
2.40.1
Information forwarded
to
andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
guix-patches.
(Wed, 21 Jun 2023 06:35:04 GMT)
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Message #20 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (splash): Update to 3.8.2.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e1020bf23e..d6dde400c9 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -833,7 +833,7 @@ (define-public siril
(define-public splash
(package
(name "splash")
- (version "3.7.2")
+ (version "3.8.2")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -841,7 +841,7 @@ (define-public splash
(commit (string-append "v" version))))
(sha256
(base32
- "0nsm6rk0bi99xz7wclk0zy4bpqf0qcsdln5cdjb30lhpf37i2fpa"))
+ "0y6l135g0a3hvvh8w8sfdh1kfq2g0gbp0dgjhnmwid8bwwcjvw8v"))
(file-name (git-file-name name version))))
(build-system gnu-build-system)
(arguments
--
2.40.1
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andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
guix-patches.
(Wed, 21 Jun 2023 06:35:04 GMT)
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Message #23 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-astropy): Update to 5.3.
[snippet]: Remove trailing #t. Prevent cfitsion from deletion.
[inputs]: Remove cfitsio
---
gnu/packages/astronomy.scm | 13 ++++++++-----
1 file changed, 8 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d6dde400c9..d21ff42690 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1138,13 +1138,13 @@ (define-public celestia-gtk
(define-public python-astropy
(package
(name "python-astropy")
- (version "5.2.2")
+ (version "5.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy" version))
(sha256
- (base32 "170ddflli35mvhf6pla7aizfw8a7ckq66g1mi1br99dx2r3y7ag6"))
+ (base32 "1rg4i5w7mggfvi63j2aj2d2fjikml55bbxswl6n0j8xkqbhlns8z"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -1153,9 +1153,12 @@ (define-public python-astropy
(for-each delete-file-recursively '("ply" "configobj")))
;; Remove cextern bundles. Check bundled versions against available
;; in Guix in the future update of astropy.
+ ;;
+ ;; cfitsio build is only available from non-publicly exposed
+ ;; bundled short version. See:
+ ;; https://github.com/astropy/astropy/pull/14311
(with-directory-excursion "cextern"
- (for-each delete-file-recursively '("cfitsio" "expat" "wcslib")))
- #t))))
+ (for-each delete-file-recursively '("expat" "wcslib")))))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -1222,7 +1225,7 @@ (define-public python-astropy
python-skyfield
python-timezonefinder))
(inputs
- (list cfitsio expat wcslib))
+ (list expat wcslib))
(propagated-inputs
(list python-configobj
python-numpy
--
2.40.1
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bug#64201; Package
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(Wed, 21 Jun 2023 06:35:04 GMT)
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Message #26 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.0.5.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 153fbd3e1a..8a9b368730 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1427,7 +1427,7 @@ (define-public python-ccdproc
(define-public python-cdflib
(package
(name "python-cdflib")
- (version "0.4.9")
+ (version "1.0.5")
(source
(origin
(method git-fetch) ; no tests in pypi archive
@@ -1436,7 +1436,7 @@ (define-public python-cdflib
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "1k557najk7ln293zwyghnhw48ays3nqf9s94kibsc7r70c2q7p08"))))
+ (base32 "1pkda9gmpjhbqxl2jj5q9rjx77lv5c908mgf20lw3rz4nvfaa2wn"))))
(build-system pyproject-build-system)
(arguments
(list #:phases
--
2.40.1
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(Wed, 21 Jun 2023 06:35:05 GMT)
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Message #29 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-drms): Update to 0.6.4.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 8a9b368730..59a4c11e53 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1554,13 +1554,13 @@ (define-public python-czml3
(define-public python-drms
(package
(name "python-drms")
- (version "0.6.3")
+ (version "0.6.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "drms" version))
(sha256
- (base32 "1b0w350y4wbgyy19zcf28xbb85mqq6gnhb6ppibbc4hbn2ixbcvj"))))
+ (base32 "0mkrmr55fgca441z7hvsyri6x9cjsh0sfas3hrj0k1k10k8vszbw"))))
(build-system python-build-system)
(arguments
(list
--
2.40.1
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Message #32 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-ccdproc): Update to 2.4.1.
[native-inputs]: Add python-semantic-version.
---
gnu/packages/astronomy.scm | 9 ++++++---
1 file changed, 6 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d21ff42690..153fbd3e1a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1398,15 +1398,18 @@ (define-public python-bayesicfitting
(define-public python-ccdproc
(package
(name "python-ccdproc")
- (version "2.4.0")
+ (version "2.4.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ccdproc" version))
(sha256
- (base32 "0fy1sni87cr05dkljd8wb7vgh7z9agh8wv5kiagxcpbcf8l06jv1"))))
+ (base32 "186plgfhrj7wivs053y65jlv1x33y8ii31jdr2rm4s6pl0j7x29z"))))
(build-system pyproject-build-system)
- (native-inputs (list python-memory-profiler python-pytest-astropy))
+ (native-inputs
+ (list python-memory-profiler
+ python-pytest-astropy
+ python-semantic-version))
(propagated-inputs
(list python-astropy
python-astroscrappy
--
2.40.1
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bug#64201; Package
guix-patches.
(Wed, 21 Jun 2023 06:35:06 GMT)
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Message #35 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-fitsio): Update to 1.1.9.
[native-inputs]: Add python-pytest, otherwise it fails to build.
[propagated-inputs]: Move cfitsio from here ...
[inputs]: ... to here, do not propagate as it's required only on build
and link time.
---
gnu/packages/astronomy.scm | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 59a4c11e53..f841005fa0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -467,13 +467,13 @@ (define-public cfitsio
(define-public python-fitsio
(package
(name "python-fitsio")
- (version "1.1.8")
+ (version "1.1.9")
(source
(origin
(method url-fetch)
(uri (pypi-uri "fitsio" version))
(sha256
- (base32 "1y80hgvlkjz1bijfyb2j03853yc1kc63yrf9ab7as31ad2r6kxb1"))
+ (base32 "08mmk0ia0glg39z3gx0n3ynja5ix0lqx0166y8yyw44kkilsqkpv"))
(modules '((guix build utils)))
(snippet
;; Remove the bundled cfitsio
@@ -499,9 +499,12 @@ (define-public python-fitsio
(("self.use_system_fitsio") "True")
(("self.system_fitsio_includedir") includedir)
(("self.system_fitsio_libdir") libdir))))))))
- (inputs (list curl))
+ (native-inputs
+ (list python-pytest))
+ (inputs
+ (list curl cfitsio))
(propagated-inputs
- (list python-numpy cfitsio))
+ (list python-numpy))
(home-page "https://github.com/esheldon/fitsio")
(synopsis
"Python library to read from and write to FITS files")
--
2.40.1
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Message #38 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-fitsio): Enable tests.
[build-system]: Swap to pyproject-build-system.
[arguments]: Add new phase 'tests-preparation
---
gnu/packages/astronomy.scm | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index f841005fa0..a26eacef75 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -481,7 +481,7 @@ (define-public python-fitsio
(delete-file-recursively "cfitsio3490")
(substitute* "MANIFEST.in"
(("recursive-include cfitsio3490.*$\n") ""))))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list
#:phases
@@ -498,7 +498,10 @@ (define-public python-fitsio
(("self.system_fitsio_libdir = None") "pass")
(("self.use_system_fitsio") "True")
(("self.system_fitsio_includedir") includedir)
- (("self.system_fitsio_libdir") libdir))))))))
+ (("self.system_fitsio_libdir") libdir)))))
+ (add-before 'check 'tests-preparation
+ (lambda _
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
(list python-pytest))
(inputs
--
2.40.1
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Message #41 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-pyerfa): Update to 2.0.0.3.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a26eacef75..829ee6bcd4 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3028,13 +3028,13 @@ (define-public python-jwst
(define-public python-pyerfa
(package
(name "python-pyerfa")
- (version "2.0.0.1")
+ (version "2.0.0.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyerfa" version))
(sha256
- (base32 "0c6y1rm51kj8ahbr1vwbswck3ix77dc3zhc2fkg6w7iczrzn7m1g"))
+ (base32 "0f8zykzxjsiwv5ibdn5asla2ng2xl0xdkrcrrd61j31mb3xbnzyp"))
(modules '((guix build utils)))
(snippet
'(begin
--
2.40.1
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Message #44 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-pyerfa): Fix tests.
[snippet]: Use G-expressions.
[arguments]: Use G-expressions. Add new phase 'tests-preparation.
---
gnu/packages/astronomy.scm | 26 ++++++++++++++++----------
1 file changed, 16 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 829ee6bcd4..514aa53258 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3037,17 +3037,23 @@ (define-public python-pyerfa
(base32 "0f8zykzxjsiwv5ibdn5asla2ng2xl0xdkrcrrd61j31mb3xbnzyp"))
(modules '((guix build utils)))
(snippet
- '(begin
- ;; Remove bundled submodule library.
- (delete-file-recursively "liberfa")
- #t))))
- (build-system python-build-system)
+ #~(begin
+ ;; Remove bundled submodule library.
+ (delete-file-recursively "liberfa")))))
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'build 'use-system-liberfa
- (lambda _
- (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1"))))))
+ (list
+ ;; Disable only one failing test:
+ ;; AttributeError: __warningregistry__
+ #:test-flags #~(list "-k" "not test_errwarn_reporting")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'use-system-liberfa
+ (lambda _
+ (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1")))
+ (add-before 'check 'tests-preparation
+ (lambda _
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
(list python-pytest-doctestplus python-pytest python-setuptools-scm))
(inputs
--
2.40.1
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Message #47 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-reproject): Update to 0.11.0.
[native-inputs]: Move python-pyvo, python-gwcs, python-shapely from here ...
[propagated-inputs]: ... to here. Add python-click, python-cloudpickle,
python-dask, python-fsspec, python-zarr.
---
gnu/packages/astronomy.scm | 25 +++++++++++++++----------
1 file changed, 15 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 514aa53258..4ba1f2eab9 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1945,13 +1945,13 @@ (define-public python-regions
(define-public python-reproject
(package
(name "python-reproject")
- (version "0.10.0")
+ (version "0.11.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "reproject" version))
(sha256
- (base32 "1ha0a1ja7k09ysd05adffgsapfwzc6m6az34a0av2mhmlwy4zb1q"))))
+ (base32 "0p07qlqinb826m4n5b5invyfyv4z750sai2caqaf598mgj04l61p"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -1974,21 +1974,26 @@ (define-public python-reproject
(lambda _
(setenv "HOME" (getcwd)))))))
(propagated-inputs
- (list python-astropy
+ (list python-asdf
+ python-astropy
python-astropy-healpix
+ python-click
+ python-cloudpickle
+ python-dask
+ python-fsspec
+ python-gwcs
python-numpy
- python-scipy))
+ python-pyvo
+ python-scipy
+ python-shapely
+ python-zarr))
(native-inputs
- (list python-asdf
- python-cython
+ (list python-cython
python-extension-helpers
- python-gwcs
python-pytest-astropy
- python-pyvo
python-semantic-version
python-pytest
- python-setuptools-scm
- python-shapely))
+ python-setuptools-scm))
(home-page "https://reproject.readthedocs.io")
(synopsis "Astronomical image reprojection in Python")
(description
--
2.40.1
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Message #50 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-stcal): Update to 1.3.8.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4ba1f2eab9..da2c56cc5b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2295,13 +2295,13 @@ (define-public python-stsci-stimage
(define-public python-stcal
(package
(name "python-stcal")
- (version "1.3.7")
+ (version "1.3.8")
(source (origin
(method url-fetch)
(uri (pypi-uri "stcal" version))
(sha256
(base32
- "0yy0pwi3krvhxfby6nzgpgyz5il3sl1j29ihbk81dh9fdh3ys2n9"))))
+ "061acpmd158vs7ndj0zflg4gcwgy96c18mkavz572xv5i0k8zyaw"))))
(build-system pyproject-build-system)
(arguments
(list #:phases #~(modify-phases %standard-phases
--
2.40.1
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Message #53 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 1.6.0.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index da2c56cc5b..7c41853818 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2324,13 +2324,13 @@ (define-public python-stcal
(define-public python-stdatamodels
(package
(name "python-stdatamodels")
- (version "1.5.0")
+ (version "1.6.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "stdatamodels" version))
(sha256
(base32
- "1lssz5mnkzgraqa9mdg1w39scsikymcp3zpmsjb146r0pqnwnpzw"))))
+ "09cms07kchwjass5qvbcdskvhv1xg8dz62s77rh63j58f2apak59"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.40.1
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Message #56 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (calcmysky) Update to 0.3.1.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 3ff4356a61..2bae404d18 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -216,7 +216,7 @@ (define-public calceph
(define-public calcmysky
(package
(name "calcmysky")
- (version "0.3.0")
+ (version "0.3.1")
(source
(origin
(method git-fetch)
@@ -225,7 +225,7 @@ (define-public calcmysky
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1lgn937px4am0lggniwby1f1dl3v4l3iigq72rl9rlhx58zv4lj1"))))
+ (base32 "14jbaf9m9wig2bs7a531dvpmdkqpd09lmyvjvj1s0mhgh9g0x9m2"))))
(build-system cmake-build-system)
(arguments
(list #:configure-flags
--
2.40.1
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Message #59 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-sunpy): Update to 5.0.0. Relax some
failing tests.
---
gnu/packages/astronomy.scm | 9 ++++++---
1 file changed, 6 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 7c41853818..4ddcb58f42 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2035,13 +2035,13 @@ (define-public python-sgp4
(define-public python-sunpy
(package
(name "python-sunpy")
- (version "4.1.5")
+ (version "5.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sunpy" version))
(sha256
- (base32 "1j5g0ivsrc5ji9s7jc3kcbi2injfs3y31pm3priycljwcsxspkpm"))))
+ (base32 "1w75yc8az86pwbf79h083j4kc2ycfk76ky5kzlmcwgp0ih23mhym"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -2049,7 +2049,10 @@ (define-public python-sunpy
#~(list "-k" (string-append
;; XXX: Failed: DID NOT RAISE <class 'ModuleNotFoundError'>
"not test_main_nonexisting_module"
- " and not test_main_stdlib_module"))
+ " and not test_main_stdlib_module"
+ ;; XXX: packaging.version.InvalidVersion: Invalid version: 'unknown'
+ " and not test_read_cdf"
+ " and not test_read_empty_cdf"))
#:phases
#~(modify-phases %standard-phases
(add-before 'install 'writable-compiler
--
2.40.1
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Message #62 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-synphot): Update to 1.2.1.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4ddcb58f42..b9c8f44c72 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3207,13 +3207,13 @@ (define-public python-suntime
(define-public python-synphot
(package
(name "python-synphot")
- (version "1.2.0")
+ (version "1.2.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "synphot" version))
(sha256
(base32
- "02pjp1bnbyq7zi1bxqv56nif4ijd8fscmnn9ldrs8yvgsbmgdvlc"))))
+ "10kcdg2gqmi1w2hsjx9hfizwbff3kll10s68hys13nzh4i8b7cc4"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.40.1
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Message #65 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-astroalign): Fix build.
---
gnu/packages/astronomy.scm | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b9c8f44c72..6c43003618 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3680,7 +3680,12 @@ (define-public python-astroalign
(sha256
(base32 "0hly20a65540hr3l1lsd1i4d90a0vdrbwnn6zx3z8s89ha9lq3pb"))))
(build-system pyproject-build-system)
- (native-inputs (list python-astropy python-ccdproc python-pillow))
+ (native-inputs
+ (list python-astropy
+ python-ccdproc
+ python-pillow
+ python-pytest
+ python-semantic-version))
(propagated-inputs
(list python-bottleneck
python-numpy
--
2.40.1
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(Mon, 10 Jul 2023 21:12:01 GMT)
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Message #68 received at 64201 <at> debbugs.gnu.org (full text, mbox):
[Message part 1 (text/plain, inline)]
Hi Guix,
A gentle ping on this issue - updates and build fixes.
Let me know if I need to rebase or adjust it.
Thanks,
Okeg
[Message part 2 (text/html, inline)]
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(Fri, 21 Jul 2023 17:52:02 GMT)
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Message #71 received at 64201 <at> debbugs.gnu.org (full text, mbox):
[Message part 1 (text/plain, inline)]
Hi Guix,
Would it be more helpful if I'll split this issue into 20 individual ones
to make sure QA is passed.
Thanks,
Oleg
On Mon, 10 Jul 2023, 22:11 Sharlatan Hellseher, <sharlatanus <at> gmail.com>
wrote:
> Hi Guix,
>
> A gentle ping on this issue - updates and build fixes.
> Let me know if I need to rebase or adjust it.
>
> Thanks,
> Okeg
>
[Message part 2 (text/html, inline)]
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Message #74 received at 64201 <at> debbugs.gnu.org (full text, mbox):
Hi Oleg,
Sharlatan Hellseher <sharlatanus <at> gmail.com> writes:
> Hi Guix,
>
> Would it be more helpful if I'll split this issue into 20 individual ones
> to make sure QA is passed.
I think QA should process them the same, individual or as a series, as
long as they don't entail the rebuild of more than 600 packages.
So no, don't split them individually, it's fine as is, especially if the
later commits build on top of previous ones.
--
Thanks,
Maxim
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(Wed, 26 Jul 2023 23:16:03 GMT)
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Message #77 received at 64201 <at> debbugs.gnu.org (full text, mbox):
Hi Guix!
Here is V2 of the patch series updating and fixing some of the packages
from (gnu packages astronomy). I try to split large patches into smaller
digestible ones and drop update for python-phoutils to the latest as it hangs
tests on 90% infinitely, I'll try to update it in next update cycle.
What's new comparing to V1:
- Branched from current master
- Large commit split into smaller ones
- All packages updated to the latest verions where possible
- Update of python-photils was excluded due infinity hangs
I've built patch series locally on x86_64, bare in mind to pass them all it
took about 20min+ on 16 threads machine, astrosoft has a large amount of tests
:-)
Building the following 6 packages would ensure 43 dependent packages are
rebuilt: python-regions <at> 0.7 python-tslearn <at> 0.6.1 python-poliastro <at> 0.17.0
python-astroalign <at> 2.4.2 python-sunpy <at> 5.0.0 python-jwst <at> 1.10.2
> ./pre-inst-env guix build $(./pre-inst-env guix refresh --list-dependent sextractor python-photutils calceph calcmysky libxisf splash python-astropy python-ccdproc python-cdflib python-drms python-fitsio python-pyerfa python-reproject python-stcal python-stdatamodels python-sunpy python-synphot python-astroalign|awk -F: '{print $2}')
> /gnu/store/qm3ls7929w0d4j8kqhrmz0w0yfvq5rp2-python-jwst-1.10.2
> /gnu/store/a7sflrsf3692giqqdf3zx1cmzknqk288-python-sunpy-5.0.0
> /gnu/store/1pyfa0ds8df3lssv7j4syvkk7hkxpa9h-python-astroalign-2.4.2
> /gnu/store/4fabnbs2f8ara1lkc71pxdc77ddb1pf7-python-regions-0.7
> /gnu/store/8855dni0axr014wnfq4kbj7rkwmfrgcl-python-poliastro-0.17.0
> /gnu/store/jwwg7qcyhik0997hlispsp8h9xc0j2y5-python-tslearn-0.6.1
Regards,
Oleg
Sharlatan Hellseher (22):
gnu: sextractor: Update to 2.28.0, fix build.
gnu: sextractor: Use G-expressions.
gnu: python-photutils: Update package style.
gnu: calceph: Update to 3.5.2.
gnu: calcmysky: Update to 0.3.1.
gnu: libxisf: Update to 0.2.8.
gnu: splash: Update to 3.8.2.
gnu: python-astropy: Update to 5.3.1.
gnu: python-ccdproc: Update to 2.4.1.
gnu: python-cdflib: Update to 1.0.5.
gnu: python-drms: Update to 0.6.4.
gnu: python-fitsio: Update to 1.1.10.
gnu: python-fitsio: Enable tests.
gnu: python-pyerfa: Update to 2.0.0.3.
gnu: python-pyerfa: Fix tests.
gnu: python-pyerfa: Use G-expressions.
gnu: python-reproject: Update to 0.11.0.
gnu: python-stcal: Update to 1.4.2.
gnu: python-stdatamodels: Update to 1.7.1.
gnu: python-sunpy: Update to 5.0.0.
gnu: python-synphot: Update to 1.2.1.
gnu: python-astroalign: Fix build.
gnu/packages/astronomy.scm | 209 ++++++++++++++++++++++---------------
1 file changed, 124 insertions(+), 85 deletions(-)
base-commit: 005912c595bf7a3329f8aa51a4ccb1d91b6ecd9e
--
2.40.1
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Message #80 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (sextractor): Update to 2.28.0, fix build.
[arguments]: Add configure flags for CFitsio detection.
[inputs]: Add cfitsio.
---
gnu/packages/astronomy.scm | 11 ++++++++---
1 file changed, 8 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9351c691d2..4e03e2fcd6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -832,7 +832,7 @@ (define-public phd2
(define-public sextractor
(package
(name "sextractor")
- (version "2.25.0")
+ (version "2.28.0")
(source
(origin
(method git-fetch)
@@ -841,7 +841,7 @@ (define-public sextractor
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "0q69n3nyal57h3ik2xirwzrxzljrwy9ivwraxzv9566vi3n4z5mw"))))
+ (base32 "15v7brjiraj2rdyxiidcgb58b3dqzdd363j31cjrfqhd1wc8ii5j"))))
(build-system gnu-build-system)
;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing
;; due to missing shared library which required on configure phase. Switch
@@ -851,6 +851,10 @@ (define-public sextractor
`(#:configure-flags
(list
"--enable-openblas"
+ (string-append
+ "--with-cfitsio-libdir=" (assoc-ref %build-inputs "cfitsio") "/lib")
+ (string-append
+ "--with-cfitsio-incdir=" (assoc-ref %build-inputs "cfitsio") "/include")
(string-append
"--with-openblas-libdir=" (assoc-ref %build-inputs "openblas") "/lib")
(string-append
@@ -862,7 +866,8 @@ (define-public sextractor
(native-inputs
(list autoconf automake libtool))
(inputs
- `(("openblas" ,openblas)
+ `(("cfitsio" ,cfitsio)
+ ("openblas" ,openblas)
("fftw" ,fftwf)))
(home-page "https://www.astromatic.net/software/sextractor")
(synopsis "Extract catalogs of sources from astronomical images")
--
2.40.1
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to
andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:16:04 GMT)
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Message #83 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (sextractor): Use G-expressions.
[inputs]: Remove labels.
---
gnu/packages/astronomy.scm | 35 +++++++++++++++++------------------
1 file changed, 17 insertions(+), 18 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4e03e2fcd6..26d4e9621d 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -848,27 +848,26 @@ (define-public sextractor
;; build to use `openblas' instead. It requires FFTW with single precision
;; `fftwf'.
(arguments
- `(#:configure-flags
- (list
- "--enable-openblas"
- (string-append
- "--with-cfitsio-libdir=" (assoc-ref %build-inputs "cfitsio") "/lib")
- (string-append
- "--with-cfitsio-incdir=" (assoc-ref %build-inputs "cfitsio") "/include")
- (string-append
- "--with-openblas-libdir=" (assoc-ref %build-inputs "openblas") "/lib")
- (string-append
- "--with-openblas-incdir=" (assoc-ref %build-inputs "openblas") "/include")
- (string-append
- "--with-fftw-libdir=" (assoc-ref %build-inputs "fftw") "/lib")
- (string-append
- "--with-fftw-incdir=" (assoc-ref %build-inputs "fftw") "/include"))))
+ (list
+ #:configure-flags
+ #~(list
+ "--enable-openblas"
+ (string-append "--with-cfitsio-incdir="
+ #$(this-package-input "cfitsio") "/include")
+ (string-append "--with-cfitsio-libdir="
+ #$(this-package-input "cfitsio") "/lib")
+ (string-append "--with-fftw-incdir="
+ #$(this-package-input "fftwf") "/include")
+ (string-append "--with-fftw-libdir="
+ #$(this-package-input "fftwf") "/lib")
+ (string-append "--with-openblas-incdir="
+ #$(this-package-input "openblas") "/include")
+ (string-append "--with-openblas-libdir="
+ #$(this-package-input "openblas") "/lib"))))
(native-inputs
(list autoconf automake libtool))
(inputs
- `(("cfitsio" ,cfitsio)
- ("openblas" ,openblas)
- ("fftw" ,fftwf)))
+ (list cfitsio fftwf openblas))
(home-page "https://www.astromatic.net/software/sextractor")
(synopsis "Extract catalogs of sources from astronomical images")
(description
--
2.40.1
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andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:17:02 GMT)
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Message #86 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-photutils): Update package style.
[build-system]: Swap to python-build-system.
[arguments]: Use G-expressions. Rename the phase before check
'writable-compiler to 'build-extensions to reflect it's purpose, add
new step in phase building extensions for testing.
[native-inputs]: Remove python-pytest-runner.
---
gnu/packages/astronomy.scm | 26 ++++++++++++++++----------
1 file changed, 16 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 26d4e9621d..15a52e0744 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1833,23 +1833,29 @@ (define-public python-photutils
(uri (pypi-uri "photutils" version))
(sha256
(base32 "1bq4ma402lpa5d6l85awlc23kasxf40nq8hgi3iyrilnfikan0jz"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:test-target "pytest"
- #:phases
- (modify-phases %standard-phases
- ;; This file is opened in both install and check phases.
- (add-before 'install 'writable-compiler
- (lambda _ (make-file-writable "photutils/_compiler.c")))
- (add-before 'check 'writable-compiler
- (lambda _ (make-file-writable "photutils/_compiler.c"))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; This file is opened in both install and check phases.
+ (add-before 'install 'writable-compiler
+ (lambda _ (make-file-writable "photutils/_compiler.c")))
+ (add-before 'check 'build-extensions
+ (lambda _
+ ;; Cython extensions have to be built before running
+ ;; the tests. If it's not build it fails with error:
+ ;;
+ ;; ModuleNotFoundError: No module named
+ ;; 'photutils.geometry.circular_overlap'
+ (make-file-writable "photutils/_compiler.c")
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
(propagated-inputs
(list python-astropy python-numpy))
(native-inputs
(list python-cython
python-extension-helpers
python-pytest-astropy
- python-pytest-runner
python-setuptools-scm))
(home-page "https://github.com/astropy/photutils")
(synopsis "Source detection and photometry")
--
2.40.1
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to
andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:17:02 GMT)
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Message #89 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (calceph): Update to 3.5.2.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 15a52e0744..9a9f6c5e9a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -181,7 +181,7 @@ (define-public aocommon
(define-public calceph
(package
(name "calceph")
- (version "3.5.1")
+ (version "3.5.2")
(source
(origin
(method url-fetch)
@@ -189,7 +189,7 @@ (define-public calceph
"https://www.imcce.fr/content/medias/recherche/equipes/asd/calceph/calceph-"
version ".tar.gz"))
(sha256
- (base32 "078wn773pwf4pg9m0h0l00g4aq744pq1rb6kz6plgdpzp3hhpk1k"))))
+ (base32 "1rnjlaiii4j0agbj4k242p212bqqmqdqa0lni6c3bnhgfnrbjfp4"))))
(build-system gnu-build-system)
(native-inputs
(list gfortran))
--
2.40.1
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to
andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:17:03 GMT)
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Message #92 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (calcmysky) Update to 0.3.1.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9a9f6c5e9a..19f6771945 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -216,7 +216,7 @@ (define-public calceph
(define-public calcmysky
(package
(name "calcmysky")
- (version "0.3.0")
+ (version "0.3.1")
(source
(origin
(method git-fetch)
@@ -225,7 +225,7 @@ (define-public calcmysky
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1lgn937px4am0lggniwby1f1dl3v4l3iigq72rl9rlhx58zv4lj1"))))
+ (base32 "14jbaf9m9wig2bs7a531dvpmdkqpd09lmyvjvj1s0mhgh9g0x9m2"))))
(build-system cmake-build-system)
(arguments
(list #:configure-flags
--
2.40.1
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to
andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:17:03 GMT)
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Message #95 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (libxisf): Update to 0.2.8.
---
gnu/packages/astronomy.scm | 6 ++----
1 file changed, 2 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 19f6771945..cbef790ec6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2684,9 +2684,7 @@ (define-public libpasastro
(define-public libxisf
(package
(name "libxisf")
- ;; TODO: v0.2.2 (current latest) failed to build on configure phase, issue
- ;; was open directly with author as he hosts source on seflhosted gitea.
- (version "0.2.1")
+ (version "0.2.8")
(source
(origin
(method git-fetch)
@@ -2695,7 +2693,7 @@ (define-public libxisf
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0fz9mmj1nz5v7hlr53q8na7khadfn1hm0d1gfpzzw3167bqpy2xv"))))
+ (base32 "1j2bg53hrr2yc55qa6549vcpj7qjnwmxjcdgc98w3ygnrjy7n7v0"))))
(build-system cmake-build-system)
(arguments
(list #:configure-flags #~(list "-DUSE_BUNDLED_LIBS=OFF")))
--
2.40.1
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to
andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:17:03 GMT)
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Message #98 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (splash): Update to 3.8.2.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index cbef790ec6..c32f0fc539 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -917,7 +917,7 @@ (define-public siril
(define-public splash
(package
(name "splash")
- (version "3.7.2")
+ (version "3.8.2")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -925,7 +925,7 @@ (define-public splash
(commit (string-append "v" version))))
(sha256
(base32
- "0nsm6rk0bi99xz7wclk0zy4bpqf0qcsdln5cdjb30lhpf37i2fpa"))
+ "0y6l135g0a3hvvh8w8sfdh1kfq2g0gbp0dgjhnmwid8bwwcjvw8v"))
(file-name (git-file-name name version))))
(build-system gnu-build-system)
(arguments
--
2.40.1
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to
andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:17:04 GMT)
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Message #101 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-astropy): Update to 5.3.1.
[snippet]: Remove trailing #t. Prevent cfitsion from deletion.
[inputs]: Remove cfitsio.
---
gnu/packages/astronomy.scm | 13 ++++++++-----
1 file changed, 8 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c32f0fc539..a18de38fbd 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1262,13 +1262,13 @@ (define-public celestia-gtk
(define-public python-astropy
(package
(name "python-astropy")
- (version "5.2.2")
+ (version "5.3.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy" version))
(sha256
- (base32 "170ddflli35mvhf6pla7aizfw8a7ckq66g1mi1br99dx2r3y7ag6"))
+ (base32 "0x4dh7wx9sn1gy6sl2d54zsd24cgfjwrlk6kfrwpzzrmbsv22lwv"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -1277,9 +1277,12 @@ (define-public python-astropy
(for-each delete-file-recursively '("ply" "configobj")))
;; Remove cextern bundles. Check bundled versions against available
;; in Guix in the future update of astropy.
+ ;;
+ ;; cfitsio build is only available from non-publicly exposed
+ ;; bundled short version. See:
+ ;; https://github.com/astropy/astropy/pull/14311
(with-directory-excursion "cextern"
- (for-each delete-file-recursively '("cfitsio" "expat" "wcslib")))
- #t))))
+ (for-each delete-file-recursively '("expat" "wcslib")))))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -1346,7 +1349,7 @@ (define-public python-astropy
python-skyfield
python-timezonefinder))
(inputs
- (list cfitsio expat wcslib))
+ (list expat wcslib))
(propagated-inputs
(list python-configobj
python-numpy
--
2.40.1
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to
andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:17:04 GMT)
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Message #104 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-ccdproc): Update to 2.4.1.
[native-inputs]: Add python-semantic-version.
---
gnu/packages/astronomy.scm | 9 ++++++---
1 file changed, 6 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a18de38fbd..154fa5a0f2 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1522,15 +1522,18 @@ (define-public python-bayesicfitting
(define-public python-ccdproc
(package
(name "python-ccdproc")
- (version "2.4.0")
+ (version "2.4.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ccdproc" version))
(sha256
- (base32 "0fy1sni87cr05dkljd8wb7vgh7z9agh8wv5kiagxcpbcf8l06jv1"))))
+ (base32 "186plgfhrj7wivs053y65jlv1x33y8ii31jdr2rm4s6pl0j7x29z"))))
(build-system pyproject-build-system)
- (native-inputs (list python-memory-profiler python-pytest-astropy))
+ (native-inputs
+ (list python-memory-profiler
+ python-pytest-astropy
+ python-semantic-version))
(propagated-inputs
(list python-astropy
python-astroscrappy
--
2.40.1
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to
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bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:17:05 GMT)
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Message #107 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.0.5.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 154fa5a0f2..798879b6a3 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1551,7 +1551,7 @@ (define-public python-ccdproc
(define-public python-cdflib
(package
(name "python-cdflib")
- (version "0.4.9")
+ (version "1.0.5")
(source
(origin
(method git-fetch) ; no tests in pypi archive
@@ -1560,7 +1560,7 @@ (define-public python-cdflib
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "1k557najk7ln293zwyghnhw48ays3nqf9s94kibsc7r70c2q7p08"))))
+ (base32 "1pkda9gmpjhbqxl2jj5q9rjx77lv5c908mgf20lw3rz4nvfaa2wn"))))
(build-system pyproject-build-system)
(arguments
(list #:phases
--
2.40.1
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bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:17:05 GMT)
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Message #110 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-drms): Update to 0.6.4.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 798879b6a3..884343ae57 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1678,13 +1678,13 @@ (define-public python-czml3
(define-public python-drms
(package
(name "python-drms")
- (version "0.6.3")
+ (version "0.6.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "drms" version))
(sha256
- (base32 "1b0w350y4wbgyy19zcf28xbb85mqq6gnhb6ppibbc4hbn2ixbcvj"))))
+ (base32 "0mkrmr55fgca441z7hvsyri6x9cjsh0sfas3hrj0k1k10k8vszbw"))))
(build-system python-build-system)
(arguments
(list
--
2.40.1
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bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:17:06 GMT)
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Message #113 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-fitsio): Update to 1.1.10.
[native-inputs]: Add python-pytest.
[propagated-inputs]: Move cfitsio from here ...
[inputs]: ... to here, do not propagate as it's required only on build
and link time.
---
gnu/packages/astronomy.scm | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 884343ae57..05fa722499 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -506,13 +506,13 @@ (define-public python-astroml
(define-public python-fitsio
(package
(name "python-fitsio")
- (version "1.1.8")
+ (version "1.1.10")
(source
(origin
(method url-fetch)
(uri (pypi-uri "fitsio" version))
(sha256
- (base32 "1y80hgvlkjz1bijfyb2j03853yc1kc63yrf9ab7as31ad2r6kxb1"))
+ (base32 "0dv2vjj8qn3rq5sr99x5yjjch5h867c8q7zh73i67dzdsk7ix0jf"))
(modules '((guix build utils)))
(snippet
;; Remove the bundled cfitsio
@@ -538,9 +538,12 @@ (define-public python-fitsio
(("self.use_system_fitsio") "True")
(("self.system_fitsio_includedir") includedir)
(("self.system_fitsio_libdir") libdir))))))))
- (inputs (list curl))
+ (native-inputs
+ (list python-pytest))
+ (inputs
+ (list curl cfitsio))
(propagated-inputs
- (list python-numpy cfitsio))
+ (list python-numpy))
(home-page "https://github.com/esheldon/fitsio")
(synopsis
"Python library to read from and write to FITS files")
--
2.40.1
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to
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Message #116 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-fitsio): Enable tests.
[build-system]: Swap to pyproject-build-system.
[arguments]: Add new phase 'build-extensions.
---
gnu/packages/astronomy.scm | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 05fa722499..6815ba7db0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -520,7 +520,7 @@ (define-public python-fitsio
(delete-file-recursively "cfitsio3490")
(substitute* "MANIFEST.in"
(("recursive-include cfitsio3490.*$\n") ""))))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
(list
#:phases
@@ -537,7 +537,10 @@ (define-public python-fitsio
(("self.system_fitsio_libdir = None") "pass")
(("self.use_system_fitsio") "True")
(("self.system_fitsio_includedir") includedir)
- (("self.system_fitsio_libdir") libdir))))))))
+ (("self.system_fitsio_libdir") libdir)))))
+ (add-before 'check 'build-extensions
+ (lambda _
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
(list python-pytest))
(inputs
--
2.40.1
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to
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bug#64201; Package
guix-patches.
(Wed, 26 Jul 2023 23:17:06 GMT)
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Message #119 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-pyerfa): Update to 2.0.0.3.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 6815ba7db0..ac6108eb6c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3151,13 +3151,13 @@ (define-public python-jwst
(define-public python-pyerfa
(package
(name "python-pyerfa")
- (version "2.0.0.1")
+ (version "2.0.0.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyerfa" version))
(sha256
- (base32 "0c6y1rm51kj8ahbr1vwbswck3ix77dc3zhc2fkg6w7iczrzn7m1g"))
+ (base32 "0f8zykzxjsiwv5ibdn5asla2ng2xl0xdkrcrrd61j31mb3xbnzyp"))
(modules '((guix build utils)))
(snippet
'(begin
--
2.40.1
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bug#64201; Package
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(Wed, 26 Jul 2023 23:17:07 GMT)
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Message #122 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-pyerfa): Use G-expressions.
[snippet]: Remove trailing #t.
---
gnu/packages/astronomy.scm | 30 +++++++++++++++---------------
1 file changed, 15 insertions(+), 15 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 97fce57cd3..6f1910232b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3160,23 +3160,23 @@ (define-public python-pyerfa
(base32 "0f8zykzxjsiwv5ibdn5asla2ng2xl0xdkrcrrd61j31mb3xbnzyp"))
(modules '((guix build utils)))
(snippet
- '(begin
- ;; Remove bundled submodule library.
- (delete-file-recursively "liberfa")
- #t))))
+ #~(begin
+ ;; Remove bundled submodule library.
+ (delete-file-recursively "liberfa")))))
(build-system pyproject-build-system)
(arguments
- `(;; Disable only one failing test:
- ;; AttributeError: __warningregistry__
- #:test-flags '("-k" "not test_errwarn_reporting")
- #:phases
- (modify-phases %standard-phases
- (add-before 'build 'use-system-liberfa
- (lambda _
- (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1")))
- (add-before 'check 'build-extensions
- (lambda _
- (invoke "python" "setup.py" "build_ext" "--inplace"))))))
+ (list
+ ;; Disable only one failing test:
+ ;; AttributeError: __warningregistry__
+ #:test-flags #~(list "-k" "not test_errwarn_reporting")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'use-system-liberfa
+ (lambda _
+ (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1")))
+ (add-before 'check 'build-extensions
+ (lambda _
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
(list python-pytest-doctestplus python-pytest python-setuptools-scm))
(inputs
--
2.40.1
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to
andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
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Message #125 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-pyerfa): Fix tests.
[build-system]: Swap to pyproject-build-system.
[arguments]: Disable a failing test. Add 'build-extensions phase.
---
gnu/packages/astronomy.scm | 12 +++++++++---
1 file changed, 9 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ac6108eb6c..97fce57cd3 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3164,13 +3164,19 @@ (define-public python-pyerfa
;; Remove bundled submodule library.
(delete-file-recursively "liberfa")
#t))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:phases
+ `(;; Disable only one failing test:
+ ;; AttributeError: __warningregistry__
+ #:test-flags '("-k" "not test_errwarn_reporting")
+ #:phases
(modify-phases %standard-phases
(add-before 'build 'use-system-liberfa
(lambda _
- (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1"))))))
+ (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1")))
+ (add-before 'check 'build-extensions
+ (lambda _
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
(list python-pytest-doctestplus python-pytest python-setuptools-scm))
(inputs
--
2.40.1
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(Wed, 26 Jul 2023 23:17:08 GMT)
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Message #128 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-reproject): Update to 0.11.0.
[native-inputs]: Move python-pyvo, python-gwcs, python-shapely from here ...
[propagated-inputs]: ... to here. Add python-click, python-cloudpickle,
python-dask, python-fsspec, python-zarr.
---
gnu/packages/astronomy.scm | 25 +++++++++++++++----------
1 file changed, 15 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 6f1910232b..1735eaa25e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2058,13 +2058,13 @@ (define-public python-regions
(define-public python-reproject
(package
(name "python-reproject")
- (version "0.10.0")
+ (version "0.11.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "reproject" version))
(sha256
- (base32 "1ha0a1ja7k09ysd05adffgsapfwzc6m6az34a0av2mhmlwy4zb1q"))))
+ (base32 "0p07qlqinb826m4n5b5invyfyv4z750sai2caqaf598mgj04l61p"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -2087,21 +2087,26 @@ (define-public python-reproject
(lambda _
(setenv "HOME" (getcwd)))))))
(propagated-inputs
- (list python-astropy
+ (list python-asdf
+ python-astropy
python-astropy-healpix
+ python-click
+ python-cloudpickle
+ python-dask
+ python-fsspec
+ python-gwcs
python-numpy
- python-scipy))
+ python-pyvo
+ python-scipy
+ python-shapely
+ python-zarr))
(native-inputs
- (list python-asdf
- python-cython
+ (list python-cython
python-extension-helpers
- python-gwcs
python-pytest-astropy
- python-pyvo
python-semantic-version
python-pytest
- python-setuptools-scm
- python-shapely))
+ python-setuptools-scm))
(home-page "https://reproject.readthedocs.io")
(synopsis "Astronomical image reprojection in Python")
(description
--
2.40.1
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to
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bug#64201; Package
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(Wed, 26 Jul 2023 23:17:08 GMT)
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Message #131 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-stcal): Update to 1.4.2.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 1735eaa25e..d7475a98e8 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2408,13 +2408,13 @@ (define-public python-stsci-stimage
(define-public python-stcal
(package
(name "python-stcal")
- (version "1.3.7")
+ (version "1.4.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "stcal" version))
(sha256
(base32
- "0yy0pwi3krvhxfby6nzgpgyz5il3sl1j29ihbk81dh9fdh3ys2n9"))))
+ "163vyqcd9qv2knf8jik8y449z7ljl2lvbd7im82bq61prgi3z2hj"))))
(build-system pyproject-build-system)
(arguments
(list #:phases #~(modify-phases %standard-phases
--
2.40.1
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to
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(Wed, 26 Jul 2023 23:17:08 GMT)
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Message #134 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 1.7.1.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d7475a98e8..cde133bc0b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2437,13 +2437,13 @@ (define-public python-stcal
(define-public python-stdatamodels
(package
(name "python-stdatamodels")
- (version "1.5.0")
+ (version "1.7.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "stdatamodels" version))
(sha256
(base32
- "1lssz5mnkzgraqa9mdg1w39scsikymcp3zpmsjb146r0pqnwnpzw"))))
+ "0d7a27myl3xgri3z7yx26mr4dpqnlfhdh5i2ql2miwymi0mx3ij5"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.40.1
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andreas <at> enge.fr, efraim <at> flashner.co.il, bavier <at> posteo.net, guix-patches <at> gnu.org:
bug#64201; Package
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(Wed, 26 Jul 2023 23:17:09 GMT)
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Message #137 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-sunpy): Update to 5.0.0. Relax some
failing tests.
---
gnu/packages/astronomy.scm | 9 ++++++---
1 file changed, 6 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index cde133bc0b..8cdece9da4 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2148,13 +2148,13 @@ (define-public python-sgp4
(define-public python-sunpy
(package
(name "python-sunpy")
- (version "4.1.5")
+ (version "5.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sunpy" version))
(sha256
- (base32 "1j5g0ivsrc5ji9s7jc3kcbi2injfs3y31pm3priycljwcsxspkpm"))))
+ (base32 "1w75yc8az86pwbf79h083j4kc2ycfk76ky5kzlmcwgp0ih23mhym"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -2162,7 +2162,10 @@ (define-public python-sunpy
#~(list "-k" (string-append
;; XXX: Failed: DID NOT RAISE <class 'ModuleNotFoundError'>
"not test_main_nonexisting_module"
- " and not test_main_stdlib_module"))
+ " and not test_main_stdlib_module"
+ ;; XXX: packaging.version.InvalidVersion: Invalid version: 'unknown'
+ " and not test_read_cdf"
+ " and not test_read_empty_cdf"))
#:phases
#~(modify-phases %standard-phases
(add-before 'install 'writable-compiler
--
2.40.1
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(Wed, 26 Jul 2023 23:17:09 GMT)
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Message #140 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-synphot): Update to 1.2.1.
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 8cdece9da4..c5c17dfb06 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3330,13 +3330,13 @@ (define-public python-suntime
(define-public python-synphot
(package
(name "python-synphot")
- (version "1.2.0")
+ (version "1.2.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "synphot" version))
(sha256
(base32
- "02pjp1bnbyq7zi1bxqv56nif4ijd8fscmnn9ldrs8yvgsbmgdvlc"))))
+ "10kcdg2gqmi1w2hsjx9hfizwbff3kll10s68hys13nzh4i8b7cc4"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.40.1
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bug#64201; Package
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(Wed, 26 Jul 2023 23:17:10 GMT)
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Message #143 received at 64201 <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/astronomy.scm (python-astroalign): Fix build.
[native-inputs]: Add python-pytest, python-semantic-version.
---
gnu/packages/astronomy.scm | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c5c17dfb06..54affefa84 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3803,7 +3803,12 @@ (define-public python-astroalign
(sha256
(base32 "0hly20a65540hr3l1lsd1i4d90a0vdrbwnn6zx3z8s89ha9lq3pb"))))
(build-system pyproject-build-system)
- (native-inputs (list python-astropy python-ccdproc python-pillow))
+ (native-inputs
+ (list python-astropy
+ python-ccdproc
+ python-pillow
+ python-pytest
+ python-semantic-version))
(propagated-inputs
(list python-bottleneck
python-numpy
--
2.40.1
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(Mon, 07 Aug 2023 18:21:01 GMT)
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Message #146 received at 64201 <at> debbugs.gnu.org (full text, mbox):
Hello,
I had a bit of time and managed to build everything depending on the first
8 commits (including python-astropy), which I just pushed. Unfortunately QA
is currently overwhelmed and underpowered, so there is no green button, but
some of the packages had actually been compiled for x86_64.
Thanks for your patience,
Andreas
Information forwarded
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(Mon, 07 Aug 2023 20:12:02 GMT)
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Message #149 received at 64201 <at> debbugs.gnu.org (full text, mbox):
[Message part 1 (text/plain, inline)]
Hi Andreas,
Would it be more reasonable to prepare other series and mark this one as
completed?
I can cover and test patches which failed for you.
Regards,
Oleg
On Mon, 7 Aug 2023, 19:20 Andreas Enge, <andreas <at> enge.fr> wrote:
> Hello,
>
> I had a bit of time and managed to build everything depending on the first
> 8 commits (including python-astropy), which I just pushed. Unfortunately QA
> is currently overwhelmed and underpowered, so there is no green button, but
> some of the packages had actually been compiled for x86_64.
>
> Thanks for your patience,
>
> Andreas
>
>
[Message part 2 (text/html, inline)]
Reply sent
to
Andreas Enge <andreas <at> enge.fr>:
You have taken responsibility.
(Tue, 08 Aug 2023 08:10:01 GMT)
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Notification sent
to
Sharlatan Hellseher <sharlatanus <at> gmail.com>:
bug acknowledged by developer.
(Tue, 08 Aug 2023 08:10:02 GMT)
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Message #154 received at 64201-done <at> debbugs.gnu.org (full text, mbox):
Hello Oleg,
Am Mon, Aug 07, 2023 at 09:11:01PM +0100 schrieb Sharlatan Hellseher:
> Would it be more reasonable to prepare other series and mark this one as
> completed?
thanks for the offer! But your patches are fine; I just tested them one
by one, while some updates needed to go together. If QA had enough computing
power, it would have created a green button and made it all a bit simpler.
We will get there eventually.
Thanks for all these contributions, which I have just pushed, so I am
closing the issue.
You may go ahead with the next series :)
Andreas
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org.
(Tue, 05 Sep 2023 11:24:04 GMT)
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This bug report was last modified 1 year and 284 days ago.
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