GNU bug report logs - #63976
[PATCH] gnu: Add python-mudata.

Previous Next

Full log

View this message in rfc822 format

From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#63976: closed ([PATCH] gnu: Add python-mudata.)
Date: Fri, 09 Jun 2023 15:11:02 +0000

[Message part 1 (text/plain, inline)]

Your message dated Fri, 09 Jun 2023 17:09:55 +0200
with message-id <87cz24oen0.fsf <at> elephly.net>
and subject line [PATCH] gnu: Add python-mudata.
has caused the debbugs.gnu.org bug report #63976,
regarding [PATCH] gnu: Add python-mudata.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
63976: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=63976
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add python-mudata.
Date: Fri, 9 Jun 2023 16:56:34 +0200

* gnu/packages/bioinformatics.scm (python-mudata): New variable.
---
 gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1caea80f86..13ae47d858 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3352,6 +3352,32 @@ (define-public python-mofax
 models trained with MOFA+ in Python.")
       (license license:expat))))
 
+(define-public python-mudata
+  (let ((commit "392f5464135d687fe64bc571d35cbf557b796ff0")
+        (revision "0"))
+    (package
+      (name "python-mudata")
+      (version (git-version "0.2.3" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/scverse/mudata")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "02h0k1q57589r0hdv8nwg1vk7g2ljvn5g66c47fy5gdilbm3gjws"))))
+      (build-system pyproject-build-system)
+      (propagated-inputs (list python-anndata python-h5py python-pandas python-flit-core))
+      (native-inputs (list python-numpy python-pytest python-zarr))
+      (home-page "https://github.com/scverse/mudata")
+      (synopsis "Python package for multi-omics data analysis")
+      (description
+       "Mudata is a Python package for multi-omics data analysis.
+It is designed to provide functionality to load, process, and store
+multimodal omics data.")
+      (license license:bsd-3))))
+
 (define-public python-pyega3
   (package
     (name "python-pyega3")

base-commit: dd587a4fefbd8841f609910af36e13aa890781b7
prerequisite-patch-id: c5352e197d46cff8e37f0ff85044983c550a9663
-- 
2.34.1

[Message part 3 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 63976-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add python-mudata.
Date: Fri, 09 Jun 2023 17:09:55 +0200

I simplified this a little and pushed this with commit
74443c30f3e20655a046c0d3ea236822ef130968.

Thank you!

-- 
Ricardo

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.