From debbugs-submit-bounces@debbugs.gnu.org Sat May 20 19:11:27 2023 Received: (at submit) by debbugs.gnu.org; 20 May 2023 23:11:27 +0000 Received: from localhost ([127.0.0.1]:59532 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0VjT-0000Su-7V for submit@debbugs.gnu.org; Sat, 20 May 2023 19:11:27 -0400 Received: from lists.gnu.org ([209.51.188.17]:47960) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0VjP-0000Sk-27 for submit@debbugs.gnu.org; Sat, 20 May 2023 19:11:26 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q0VjN-0007MC-LZ for guix-patches@gnu.org; Sat, 20 May 2023 19:11:21 -0400 Received: from mout01.posteo.de ([185.67.36.65]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q0VjH-0002L3-RP for guix-patches@gnu.org; Sat, 20 May 2023 19:11:19 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 258A4240027 for ; Sun, 21 May 2023 01:11:11 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624271; bh=weW35NSj+L/5CF4HtRJM/JwSNLETf3mjJx0khYaDdk4=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=IYEXFcMMr1rngM0rUE7jC+9kPHKe+478FVqumOyie13ZLm3UdQILZns0os6VoUxIZ q+IJ822YvnpDvmdwWQXYZUUlMwuHANEeKuLfCe0Dl12BbPIz4rWqEWv+TF80yS4oqT K7+K2/8tDBkngH9EmQ35nZTpVGrw2mjrOfQLMhPK+mzSCNZUCLApLydBB/HahSAY4G M20ZTAN1YgJPUW49//ea6npBz0CS9yZtAIqJKM9K6uqGR8n5e9oPCUyJpPZ2ycxBm+ hRvXf8I6gSzBC3mEgZa35aksziQwSUjOro2a5e+CGl9BsKHhuWDiifn8iq+Hndz0xA XRaZ5o5AjCK+Q== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzwX3Pktz9rxF; Sun, 21 May 2023 01:11:08 +0200 (CEST) From: Vinicius Monego To: guix-patches@gnu.org Subject: [PATCH 0/9] Add PyMC. Date: Sat, 20 May 2023 23:10:58 +0000 Message-Id: <20230520231058.960514-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=185.67.36.65; envelope-from=monego@posteo.net; helo=mout01.posteo.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) This patchset adds the PyMC probabilistic programming package. Vinicius Monego (9): gnu: Add python-vega-datasets. gnu: Add python-altair. gnu: Add python-einops. gnu: python-xarray: Update to 2023.5.0. gnu: Add python-xarray-einstats. gnu: Add python-arviz. gnu: Add python-fastprogress. gnu: Add python-pytensor. gnu: Add python-pymc. gnu/packages/python-science.scm | 150 +++++++++++++++++++++++++++++--- gnu/packages/python-xyz.scm | 26 ++++++ gnu/packages/statistics.scm | 140 +++++++++++++++++++++++++++++ 3 files changed, 306 insertions(+), 10 deletions(-) -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sat May 20 19:13:11 2023 Received: (at 63619) by debbugs.gnu.org; 20 May 2023 23:13:11 +0000 Received: from localhost ([127.0.0.1]:59538 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0Vl8-0000Vr-Mi for submit@debbugs.gnu.org; Sat, 20 May 2023 19:13:10 -0400 Received: from mout02.posteo.de ([185.67.36.66]:48943) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0Vl6-0000Vd-O5 for 63619@debbugs.gnu.org; Sat, 20 May 2023 19:13:09 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 6B24B240101 for <63619@debbugs.gnu.org>; Sun, 21 May 2023 01:13:02 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624382; bh=iZyENgMK6rO+/Lm7tXWlaXjyMP0pAjlxVJELCCpGGw0=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=FWDmOR8vjQZao3TOJ1RB1GJEUF5uSKe0EYCva+sNXv56IDE4tIPy4akyi/4BJWMHw QVnOgCQAtzJG9VT+VVjc+u4SaPEKR5Z5DhWCHvxS6lAP1b/ntGwLWfRvil3DMGuQ/O o1Vz85H0WBrtg2KCQy7uRrr7ZtCH9b4/dWeaiP1W/qF5jnaRl6FbPOqyLlN03FiN8z 3OAohdIyJSTEusDWaP/cIA1dLJXli9Wqb8XknExfth1r3nKJpK1SN0yZXfq6v5xn4Z 5JJUi0GSRx6sT29u2YeFIgrjoBdThYeAefolCUj47lgwsoM3uBlnFiEfjwkoqfRCQI sjOzRCXOzadEQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzyj1FwWz9rxF; Sun, 21 May 2023 01:13:00 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH 1/9] gnu: Add python-vega-datasets. Date: Sat, 20 May 2023 23:12:33 +0000 Message-Id: <20230520231241.962799-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/statistics.scm (python-vega-datasets): New variable. --- gnu/packages/statistics.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 13232a00e3..d42c6baed6 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2062,6 +2062,26 @@ (define-public r-xtable "This package provides tools to export R data as LaTeX and HTML tables.") (license license:gpl2+))) +(define-public python-vega-datasets + (package + (name "python-vega-datasets") + (version "0.9.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "vega_datasets" version)) + (sha256 + (base32 + "1h1zv607mars2j73v8fdwihjh479blqxyw29nhmc73lf40s9iglx")))) + (build-system pyproject-build-system) + (arguments + `(#:tests? #f)) ; this is a data-only package, so no tests + (propagated-inputs (list python-pandas)) + (home-page "https://github.com/altair-viz/vega_datasets") + (synopsis "Example datasets used by Vega-related projects") + (description "This package provides a collection of datasets used in Vega +and Vega-Lite examples.") + (license license:expat))) + (define-public python-hdmedians (package (name "python-hdmedians") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sat May 20 19:13:17 2023 Received: (at 63619) by debbugs.gnu.org; 20 May 2023 23:13:17 +0000 Received: from localhost ([127.0.0.1]:59542 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0VlF-0000WB-0J for submit@debbugs.gnu.org; Sat, 20 May 2023 19:13:17 -0400 Received: from mout02.posteo.de ([185.67.36.66]:44637) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0VlC-0000Vk-Fg for 63619@debbugs.gnu.org; Sat, 20 May 2023 19:13:15 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id B444C240101 for <63619@debbugs.gnu.org>; Sun, 21 May 2023 01:13:08 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624388; bh=KBVyxLPPxy4Bl4lOAFDfD+xbGiIloqs00m3Z4ml6j6U=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=KrrhCqgTAausr0XO2rGjmSX0OVdvGuOOBa2NgOT++TKN9whKi6GXMxUSj+bFLPA2E 9W4sLRt9RdXDFfV4okcRUpyxmyxc92VT4Npx8O2anM/f8gfzk1LQlXVlCN7MPxmm3n EiRCEU8lCpP9AFn+QXM53eOgL7hZvhJLBuAjHD6IVyevCADofGLYs3LKqv8rBdQfMT GBPyT3QrNFMx3+kMjfYP4D1CpUtns2GvkkImjRxD0gtkIn6IUmlJb6qyePaPVhcSxY bZMhLiGn1wUczqDbDbpB4mg5Jf9HttiAlYnqDNy9ttZxJ7ku1T3vZ3qP+u++/CiJM6 MRsq1KkDnIbRw== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzyq4P2bz9rxL; Sun, 21 May 2023 01:13:07 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH 2/9] gnu: Add python-altair. Date: Sat, 20 May 2023 23:12:34 +0000 Message-Id: <20230520231241.962799-2-monego@posteo.net> In-Reply-To: <20230520231241.962799-1-monego@posteo.net> References: <20230520231241.962799-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/statistics.scm (python-altair): New variable. --- gnu/packages/statistics.scm | 39 +++++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index d42c6baed6..574790731e 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -85,6 +85,7 @@ (define-module (gnu packages statistics) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-science) #:use-module (gnu packages python-xyz) #:use-module (gnu packages readline) @@ -2082,6 +2083,44 @@ (define-public python-vega-datasets and Vega-Lite examples.") (license license:expat))) +(define-public python-altair + (package + (name "python-altair") + (version "5.0.0") + (source (origin + (method git-fetch) ; no tests in PyPI + (uri (git-reference + (url "https://github.com/altair-viz/altair") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "11j7v2s25xwz3qdjbbps3ma2dd68cr87vxn22x9fyfzgbs9pc7mx")))) + (build-system pyproject-build-system) + (arguments + ;; test_render_examples_to_chart opens an external connection. + ;; test_save_html introduces a circular dependency on altair-viewer. + (list #:test-flags #~(list "-k" (string-append + "not test_render_examples_to_chart" + " and not test_save_html")))) + (propagated-inputs (list python-jinja2 + python-jsonschema + python-numpy + python-pandas + python-toolz + python-typing-extensions)) + (native-inputs (list python-black + python-hatchling + python-ipython + python-m2r + python-pytest + python-vega-datasets)) + (home-page "https://altair-viz.github.io/") + (synopsis "Declarative statistical visualization library for Python") + (description + "Vega-Altair is a declarative statistical visualization library for Python.") + (license license:expat))) + (define-public python-hdmedians (package (name "python-hdmedians") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sat May 20 19:13:24 2023 Received: (at 63619) by debbugs.gnu.org; 20 May 2023 23:13:24 +0000 Received: from localhost ([127.0.0.1]:59546 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0VlM-0000WW-Dy for submit@debbugs.gnu.org; Sat, 20 May 2023 19:13:24 -0400 Received: from mout01.posteo.de ([185.67.36.65]:59235) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0VlK-0000WA-DG for 63619@debbugs.gnu.org; Sat, 20 May 2023 19:13:23 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 99BCE240027 for <63619@debbugs.gnu.org>; Sun, 21 May 2023 01:13:16 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624396; bh=SZULgRpieMd3Fos6Dt7wI1pDTHO7CapzA5x3H5de8go=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=bFlTETCvrvn0AxjvFmTTLPAhpwOWvt1Pld4HIAevZ+H4q1AyVTG9hrOpsETJ5mA42 QGjKS4kFtDxSUvy/6m0Vn84cFNqPGTAAeNxV4dAf36/RrALxE1bytxmWogdwXoCKTT g8UFM4WkPLE24EuXXLunK/zG1Uiv/bEBNj+m7ICa48+e45exy/UZVoeMmWvapaggTd uAAtwvisJUISLWmAWVD/RnzZuGpTgL3ji/r+pZOknBpCDJJmxfd9lle5b/SKxML+Lv BUfxiz3u+53rft+m8evcyEhRVUj0IE2pWujATSieRjPOKq28dwxzaeALE1YEFDWKk+ 1klk7I/1VMAgg== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzyz3h4bz9rxF; Sun, 21 May 2023 01:13:14 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH 3/9] gnu: Add python-einops. Date: Sat, 20 May 2023 23:12:35 +0000 Message-Id: <20230520231241.962799-3-monego@posteo.net> In-Reply-To: <20230520231241.962799-1-monego@posteo.net> References: <20230520231241.962799-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/python-science.scm (python-einops): New variable. --- gnu/packages/python-science.scm | 34 +++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 7d3319e367..91c3904783 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -669,6 +669,40 @@ (define-public python-geosketch necessary for reproducing the experiments in the paper.") (license license:expat))) +(define-public python-einops + (package + (name "python-einops") + (version "0.6.1") + (source (origin + (method git-fetch) ;PyPI misses .ipynb files required for tests + (uri (git-reference + (url "https://github.com/arogozhnikov/einops") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1h8p39kd7ylg99mh620xr20hg7v78x1jnj6vxwk31rlw2dmv2dpr")))) + (build-system pyproject-build-system) + (arguments + (list #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'set-backend + (lambda _ + ;; Einops supports different backends, but we test + ;; only NumPy for availability and simplicity. + (setenv "EINOPS_TEST_BACKENDS" "numpy")))))) + (native-inputs (list jupyter + python-hatchling + python-nbconvert + python-nbformat + python-parameterized + python-pytest)) + (propagated-inputs (list python-numpy)) + (home-page "https://einops.rocks/") + (synopsis "Tensor operations for different backends") + (description "Einops provides a set of tensor operations for NumPy and +multiple deep learning frameworks.") + (license license:expat))) + (define-public python-xarray (package (name "python-xarray") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sat May 20 19:13:40 2023 Received: (at 63619) by debbugs.gnu.org; 20 May 2023 23:13:40 +0000 Received: from localhost ([127.0.0.1]:59550 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0Vlb-0000X0-SU for submit@debbugs.gnu.org; Sat, 20 May 2023 19:13:40 -0400 Received: from mout02.posteo.de ([185.67.36.66]:36955) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0VlZ-0000Wm-N3 for 63619@debbugs.gnu.org; Sat, 20 May 2023 19:13:38 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 38CA2240101 for <63619@debbugs.gnu.org>; Sun, 21 May 2023 01:13:32 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624412; bh=lVytK6/noGHtT9xxcUJ01EYy1oFl30rq8+eotg9rY/8=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=qHSmjDXzPFzYhSTjZUGqVrbF1m8CKGxmBxzjEwpMbmM+YO9Wi579IXP9zpdsQta5Z xTaBO10SYZj33GXeWcGU92r+aJbm/uPpM0buiw7FVL0lIT+ocSbyB1VumUZ2J6gLnI faq217H+Bzhn0MI0il0jx3CCuYwcxzJTnPMowR6PVEOrNvBMfGoK1gzXx9pKSCQxBV 5dnDxrbQcrBBydi5V4Sw3NeBz3udic2TuHTdhqHLrsAMsnqjDpS9Db0rhA98ClCrN2 Mzz8vuDBReS2TFp/m2hMyE9eqzVcgpR5v3ELAS/RGKtHoFqHisiSgKZZQAWkRaGL3B x7dUrokt3e08w== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzzG14cPz9rxF; Sun, 21 May 2023 01:13:29 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH 4/9] gnu: python-xarray: Update to 2023.5.0. Date: Sat, 20 May 2023 23:12:36 +0000 Message-Id: <20230520231241.962799-4-monego@posteo.net> In-Reply-To: <20230520231241.962799-1-monego@posteo.net> References: <20230520231241.962799-1-monego@posteo.net> MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/python-science.scm (python-xarray): Update to 2023.5.0. [build-system]: Switch to pyproject-build-system. [arguments]: Don't override the check phase. --- gnu/packages/python-science.scm | 14 ++++---------- 1 file changed, 4 insertions(+), 10 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 91c3904783..468da66a2b 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -9,7 +9,7 @@ ;;; Copyright © 2019, 2021, 2022, 2023 Maxim Cournoyer ;;; Copyright © 2019 Giacomo Leidi ;;; Copyright © 2020 Pierre Langlois -;;; Copyright © 2020, 2021, 2022 Vinicius Monego +;;; Copyright © 2020, 2021, 2022, 2023 Vinicius Monego ;;; Copyright © 2021 Greg Hogan ;;; Copyright © 2021 Roel Janssen ;;; Copyright © 2021 Paul Garlick @@ -706,24 +706,18 @@ (define-public python-einops (define-public python-xarray (package (name "python-xarray") - (version "0.15.1") + (version "2023.5.0") (source (origin (method url-fetch) (uri (pypi-uri "xarray" version)) (sha256 (base32 - "1yx8j66b7rn10m2l6gmn8yr9cn38pi5cj0x0wwpy4hdnhy6i7qv4")))) - (build-system python-build-system) + "1s05ykxbhid8q0wbdns3kksdbbmxv47asmqwgp5wxfc284gnb2ii")))) + (build-system pyproject-build-system) (native-inputs (list python-setuptools-scm python-pytest)) (propagated-inputs (list python-numpy python-pandas)) - (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda _ - (invoke "pytest")))))) (home-page "https://github.com/pydata/xarray") (synopsis "N-D labeled arrays and datasets") (description "Xarray (formerly xray) makes working with labelled -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sat May 20 19:13:46 2023 Received: (at 63619) by debbugs.gnu.org; 20 May 2023 23:13:46 +0000 Received: from localhost ([127.0.0.1]:59554 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0Vli-0000XK-9a for submit@debbugs.gnu.org; Sat, 20 May 2023 19:13:46 -0400 Received: from mout02.posteo.de ([185.67.36.66]:41445) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0Vlg-0000Wy-NY for 63619@debbugs.gnu.org; Sat, 20 May 2023 19:13:45 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 3C909240101 for <63619@debbugs.gnu.org>; Sun, 21 May 2023 01:13:39 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624419; bh=0ptGnDAWOx+DMMdK9eo5LyxWzCYZK8Rxfx3qOKZYIZs=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=aFFEy7EJZajtI5DbsVkKDXen6/c3CxDkhrtLT/s4SvOQ6MAYLtOTdpdvahimaR53W Th7+0b0tefFZ+d7x3ZHjqJCzblYZW+mNk2hknODtlX+x+fmT+M+QIZZfUpIAj2ObFB eu3FYZ8vQgyPFhkBhIhxYtBFBiso0ABm/RYGIIU/evfDdTZwMIRW2wXX6U3k8vA7gD NwC3lum9FVpmODs5ZZMUcmCTxLqR6kwdM/yey3wuIUMXC48Q/g9gLsrnLP4IAxRt4/ cI0kcjF6UfQKK0zGKqXbQ7KsdTH1xi9sMWno9R4/F+vqwXmSPTbfgjUI9znKjiFhkB kbL9tkCX1u7aQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzzP65tYz9rxF; Sun, 21 May 2023 01:13:37 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH 5/9] gnu: Add python-xarray-einstats. Date: Sat, 20 May 2023 23:12:37 +0000 Message-Id: <20230520231241.962799-5-monego@posteo.net> In-Reply-To: <20230520231241.962799-1-monego@posteo.net> References: <20230520231241.962799-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/python-science.scm (python-xarray-einstats): New variable. --- gnu/packages/python-science.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 468da66a2b..d076c877fc 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -730,6 +730,30 @@ (define-public python-xarray and visualization with these data structures.") (license license:asl2.0))) +(define-public python-xarray-einstats + (package + (name "python-xarray-einstats") + (version "0.5.1") + (source (origin + (method git-fetch) ; no tests in PyPI + (uri (git-reference + (url "https://github.com/arviz-devs/xarray-einstats") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1gg7p2lq7zxic64nbr6a8ynizs8rjzb29fnqib7hw3lmp13wsfm0")))) + (build-system pyproject-build-system) + (native-inputs (list python-einops python-flit-core python-numba + python-pytest)) + (propagated-inputs (list python-numpy python-scipy python-xarray)) + (home-page "https://einstats.python.arviz.org/en/latest/") + (synopsis "Stats, linear algebra and einops for xarray") + (description + "@code{xarray_einstats} provides wrappers around some NumPy and SciPy +functions and around einops with an API and features adapted to xarray.") + (license license:asl2.0))) + (define-public python-msgpack-numpy (package (name "python-msgpack-numpy") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sat May 20 19:13:54 2023 Received: (at 63619) by debbugs.gnu.org; 20 May 2023 23:13:55 +0000 Received: from localhost ([127.0.0.1]:59558 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0Vlq-0000Xg-KS for submit@debbugs.gnu.org; Sat, 20 May 2023 19:13:54 -0400 Received: from mout01.posteo.de ([185.67.36.65]:59093) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0Vln-0000XJ-D6 for 63619@debbugs.gnu.org; Sat, 20 May 2023 19:13:52 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id DE7B8240027 for <63619@debbugs.gnu.org>; Sun, 21 May 2023 01:13:45 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624425; bh=4SsNvFKwgMt8S0VOD3zDc+FIp+vinj5YEMQ6BRQyxSQ=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=H1srdgC63w1J88MnX3ywbdfqVkK/yGg9f9wkaC8mPa/YbZtTwGy99F/Pf59q5o6zN rMpxQa2ALipznJPapub1PNe9wSTBRbkofceO1ZzXedmGqKS0jkBLD3qWonYJ6mdOD1 Ooo56q+gxEFI6avjI8FBXqzUrRQalgeKn4dQjznX+rYdTryfSG07GnfAKsyoMEZLj/ klZRQWWf7n+eOviW7frwotsnM3wpDw9YZJM34RIJ3UDFTnvtdGVdF0dRih6H5d3A2h HqTHTbsJSdt0yrR9SHL0LPHfbgiRAUBoj7zjMqHm/uOfcs3XzHNZWb98vUTPNwilzV Yzb91G+DH0QPQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzzX67ztz6txl; Sun, 21 May 2023 01:13:44 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH 6/9] gnu: Add python-arviz. Date: Sat, 20 May 2023 23:12:38 +0000 Message-Id: <20230520231241.962799-6-monego@posteo.net> In-Reply-To: <20230520231241.962799-1-monego@posteo.net> References: <20230520231241.962799-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/statistics.scm (python-arviz): New variable. --- gnu/packages/statistics.scm | 41 +++++++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 574790731e..c39cf9c0ac 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2151,6 +2151,47 @@ (define-public python-hdmedians machine learning, computer vision, and high-dimensional statistics.") (license license:asl2.0))) +(define-public python-arviz + (package + (name "python-arviz") + (version "0.15.1") + (source (origin + (method git-fetch) ; PyPI misses some test files + (uri (git-reference + (url "https://github.com/arviz-devs/arviz") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0nqr4v927r9kc50z7rwlk2m8nw3dnnmmwmwcfijzd93gbg53wc4f")))) + (build-system pyproject-build-system) + (arguments + ;; FIXME: matplotlib tests fail because of the "--save" test flag. + (list #:test-flags #~'("--ignore" + "arviz/tests/base_tests/test_plots_matplotlib.py") + #:phases #~(modify-phases %standard-phases + (add-before 'check 'write-permission + (lambda _ + ;; 3 tests require write permission. + (setenv "HOME" "/tmp")))))) + (native-inputs (list python-cloudpickle python-pytest)) + (propagated-inputs (list python-h5netcdf + python-matplotlib + python-numpy + python-packaging + python-pandas + python-scipy + python-typing-extensions + python-xarray + python-xarray-einstats)) + (home-page "https://github.com/arviz-devs/arviz") + (synopsis "Exploratory analysis of Bayesian models") + (description + "ArviZ is a Python package for exploratory analysis of Bayesian models. +It includes functions for posterior analysis, data storage, model checking, +comparison and diagnostics.") + (license license:asl2.0))) + (define-public python-patsy (package (name "python-patsy") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sat May 20 19:13:59 2023 Received: (at 63619) by debbugs.gnu.org; 20 May 2023 23:13:59 +0000 Received: from localhost ([127.0.0.1]:59562 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0Vlu-0000Y2-Uz for submit@debbugs.gnu.org; Sat, 20 May 2023 19:13:59 -0400 Received: from mout01.posteo.de ([185.67.36.65]:57461) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0Vlt-0000XX-Hr for 63619@debbugs.gnu.org; Sat, 20 May 2023 19:13:57 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 0E335240028 for <63619@debbugs.gnu.org>; Sun, 21 May 2023 01:13:52 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624432; bh=RJCE5Yh/a04cR3mMGbD6e6pkDvExKJS8XG8K3X14oEg=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=FZX954Mok5HymDMvaJhrsyTajnT2MdONeTASexRSamVkLF+MhpnS2hndssJ7RZLjJ 9773/Okw1ktETjpT/IIQ8NhE36wdCoXEEvlox8xff73PRE/ksU1TzBR2j047OUz/sM kMJuaBKEzw13TBDd2kbx2t+lyi49Jl169sg/JF9oWvCvrbnNAx8nqD92X4mPSdNyGZ A4TkkvN3PnkgP9pVqGkfDt2TwfthvW9xDqAnIQQl597MMcEVa0d6e6eQCVvNnPymnM LEZwOIg0T4wRDASewTuDHwfVgbsKB2vTXBou8jKzvOqRq5T2k9mY0cX4FBejPRVx46 Jt2C8XUcbAEUA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzzg0ck4z6tsb; Sun, 21 May 2023 01:13:50 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH 7/9] gnu: Add python-fastprogress. Date: Sat, 20 May 2023 23:12:39 +0000 Message-Id: <20230520231241.962799-7-monego@posteo.net> In-Reply-To: <20230520231241.962799-1-monego@posteo.net> References: <20230520231241.962799-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/python-xyz.scm (python-fastprogress): New variable. --- gnu/packages/python-xyz.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index f061fb4cfd..9ee45ab525 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -3002,6 +3002,32 @@ (define-public python-capturer for additional processing.") (license license:expat))) +(define-public python-fastprogress + (package + (name "python-fastprogress") + (version "1.0.3") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/fastai/fastprogress") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "01h8f786wgmmd3fj98wk1n5id67nsp19gs8bbgims04aciwhvj21")))) + (build-system pyproject-build-system) + (arguments + (list #:tests? #f ;there are no tests + #:phases #~(modify-phases %standard-phases + ;; XXX: Fails with: "In procedure utime: No such file + ;; or directory". + (delete 'ensure-no-mtimes-pre-1980)))) + (home-page "https://github.com/fastai/fastprogress") + (synopsis "Progress bar for Jupyter Notebook and console") + (description + "Fastprogress is a progress bar for Jupyter Notebook and console.") + (license license:asl2.0))) + (define-public python-case (package (name "python-case") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sat May 20 19:14:09 2023 Received: (at 63619) by debbugs.gnu.org; 20 May 2023 23:14:09 +0000 Received: from localhost ([127.0.0.1]:59573 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0Vm5-0000Zb-7q for submit@debbugs.gnu.org; Sat, 20 May 2023 19:14:09 -0400 Received: from mout01.posteo.de ([185.67.36.65]:41973) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0Vm3-0000YQ-IC for 63619@debbugs.gnu.org; Sat, 20 May 2023 19:14:08 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 123F3240028 for <63619@debbugs.gnu.org>; Sun, 21 May 2023 01:14:02 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624442; bh=ok5Jcap8QeYUZ4fcjGCPY3ldgXDaemhKa7PfJCVs0QI=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=mrnz4ni/cMvOZrmbGinL/BfVRw/0Qu2Y8rGxiZM678FmhQPQFympUJdNsxnZA2VvN oRtTEcW07Qn5RdpysgpIN4vAOzQ90MVzot6GIaYgTF/5zDq9Iq8ZTt55WTTqedIB+r 9XD1zt6znSWEZfzVfuOaU6mm7b/Djb1ZPROGond1hykg/rUvKf9jcvNhC/l13Hrt4Q vbge4410NdknnrczhMNtRnhy3+O5wcT3uC05AQLuKy2CABR3DXU+zvVtrYBINEAQcz /4mQt47jf+NAQL/JGdBLQ0XvuG+LLzhgPqklQZA5JZlckQPMZYbUJ147w+snxg2f54 f8f4plgt9+H0A== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzzp3FS4z6tm4; Sun, 21 May 2023 01:13:58 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH 8/9] gnu: Add python-pytensor. Date: Sat, 20 May 2023 23:12:40 +0000 Message-Id: <20230520231241.962799-8-monego@posteo.net> In-Reply-To: <20230520231241.962799-1-monego@posteo.net> References: <20230520231241.962799-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/python-science.scm (python-pytensor): New variable. --- gnu/packages/python-science.scm | 78 +++++++++++++++++++++++++++++++++ 1 file changed, 78 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index d076c877fc..a419f4d023 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -754,6 +754,84 @@ (define-public python-xarray-einstats functions and around einops with an API and features adapted to xarray.") (license license:asl2.0))) +(define-public python-pytensor + (package + (name "python-pytensor") + (version "2.11.3") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pymc-devs/pytensor") + (commit (string-append "rel-" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1qg38jv1244v5lzjgnb116jpz1gj8p3c5pjxr2nvkx7qpjwzxvk6")))) + (build-system pyproject-build-system) + (arguments + (list #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'write-permissions + (lambda _ + (setenv "HOME" "/tmp"))) + (add-after 'unpack 'versioneer + (lambda _ + ;; Our version of versioneer needs setup.cfg. + ;; This is adapted from pyproject.toml. + (with-output-to-file "setup.cfg" + (lambda () + (display + "[versioneer] +VCS = git +style = pep440 +versionfile_source = pytensor/_version.py +versionfile_build = pytensor/_version.py +tag_prefix = rel- +"))) + (invoke "versioneer" "install") + (substitute* "setup.py" + (("versioneer.get_version\\(\\)") + (string-append "\"" + #$version "\""))))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; Test discovery fails, have to call pytest by hand + ;; test_tensor_basic.py file requires JAX. + (invoke "python" "-m" "pytest" "-vv" + "--ignore" + "tests/link/jax/test_tensor_basic.py" + ;; Skip benchmark tests. + "-k" + (string-append "not test_elemwise_speed" + " and not test_logsumexp_benchmark" + " and not test_fused_elemwise_benchmark" + " and not test_scan_multiple_output" + " and not test_vector_taps_benchmark" + " and not test_cython_performance") + ;; Skip computationally intensive tests. + "--ignore" "tests/scan/" + "--ignore" "tests/tensor/" + "--ignore" "tests/sandbox/" + "--ignore" "tests/sparse/sandbox/"))))))) + (native-inputs (list python-cython python-pytest python-versioneer)) + (propagated-inputs (list python-cons + python-etuples + python-filelock + python-logical-unification + python-minikanren + python-numba + python-numpy + python-scipy + python-typing-extensions)) + (home-page "https://pytensor.readthedocs.io/en/latest/") + (synopsis + "Library for mathematical expressions in multi-dimensional arrays") + (description + "PyTensor is a Python library that allows one to define, +optimize, and efficiently evaluate mathematical expressions involving +multi-dimensional arrays. It is a fork of the Aesara library.") + (license license:bsd-3))) + (define-public python-msgpack-numpy (package (name "python-msgpack-numpy") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sat May 20 19:14:17 2023 Received: (at 63619) by debbugs.gnu.org; 20 May 2023 23:14:17 +0000 Received: from localhost ([127.0.0.1]:59577 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0VmC-0000Zu-Pi for submit@debbugs.gnu.org; Sat, 20 May 2023 19:14:17 -0400 Received: from mout01.posteo.de ([185.67.36.65]:36375) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0VmA-0000Za-Cq for 63619@debbugs.gnu.org; Sat, 20 May 2023 19:14:14 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id DC7E3240027 for <63619@debbugs.gnu.org>; Sun, 21 May 2023 01:14:08 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624448; bh=3SiXQeUS64hez9/PvwjBy8GsmNvW9gdwrL8AoR33znQ=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=NVshdcVcBH9S/sH58X39x8hYtosD/g61/dGYd0n9hnc3RYqIzkLLAa05zytf0NykS /PN6bBASYZP/tMlPjIf0M1N6KDG9Y1NYBAaHTSWCYaHqDU3MeoQpgBIzEtD6+yCeAE 0HodhyIcZuCWoj5xxeYpPGBNBe+1E/xgINhA3aRzWtXsWC5K8+DTlevX1IebX1aAIk LrIQ0Hbe1B8JT9X0VsHjWWTrqXBzBthgHOsnS+qIE49/8/ovIjr/Ossv7wPNQB4ZCO ntTUPn4P8FX1IDIXwOwQvW58y3gjOf9kiiJi0wC0PZ7tT+2x70jkvfmsMxHuNK6xWX bff6Dq+TKKk7Q== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzzz0dGwz6tx1; Sun, 21 May 2023 01:14:06 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH 9/9] gnu: Add python-pymc. Date: Sat, 20 May 2023 23:12:41 +0000 Message-Id: <20230520231241.962799-9-monego@posteo.net> In-Reply-To: <20230520231241.962799-1-monego@posteo.net> References: <20230520231241.962799-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/statistics.scm (python-pymc): New variable. --- gnu/packages/statistics.scm | 40 +++++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index c39cf9c0ac..4aac3369ad 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2192,6 +2192,46 @@ (define-public python-arviz comparison and diagnostics.") (license license:asl2.0))) +(define-public python-pymc + (package + (name "python-pymc") + (version "5.3.1") + (source (origin + (method git-fetch) ; no tests in PyPI + (uri (git-reference + (url "https://github.com/pymc-devs/pymc") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1295b0d1zgnpy2hgm0i9jhnnqgzkya7cwcyhq45fdrz65mi9b65h")))) + (build-system pyproject-build-system) + (arguments + ;; Tests are computationally intensive and around 130 tests out of ~2800 + ;; fail due to a missing .cc file in PyTensor. + (list #:tests? #f + #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'write-permissions + (lambda _ + (setenv "HOME" "/tmp")))))) + (native-inputs (list python-pytest-cov)) + (propagated-inputs (list python-arviz + python-cachetools + python-cloudpickle + python-fastprogress + python-numpy + python-pandas + python-pytensor + python-scipy + python-typing-extensions)) + (home-page "https://github.com/pymc-devs/pymc") + (synopsis "Library for probabilistic programming in Python") + (description + "PyMC (formerly PyMC3) is a Python package for Bayesian +statistical modeling focusing on advanced Markov chain Monte Carlo (MCMC) and +variational inference (VI) algorithms.") + (license license:asl2.0))) + (define-public python-patsy (package (name "python-patsy") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Mon Jun 05 09:02:05 2023 Received: (at 63619) by debbugs.gnu.org; 5 Jun 2023 13:02:05 +0000 Received: from localhost ([127.0.0.1]:48425 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q69qW-0004aA-Uw for submit@debbugs.gnu.org; Mon, 05 Jun 2023 09:02:05 -0400 Received: from eggs.gnu.org ([209.51.188.92]:55074) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q69qV-0004ZS-0A for 63619@debbugs.gnu.org; Mon, 05 Jun 2023 09:02:03 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q69qP-0008P4-OA; Mon, 05 Jun 2023 09:01:57 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:In-Reply-To:Date:References:Subject:To: From; bh=eQ9rw+Oawd3PIEBBxxWcpy04P2SDf8exqQq9S9nhYng=; b=L/DU4Gwx4noKkzpPmnsT 084fqTUw7jmxiJ2Y/R5/cvhLEbAfVwQdewJMTCVZIpSyNjdkm8Klg4sbaTi1M1CmJkz9CqLPLDECz J6LBGR5X2djKYCsSijpkuVy2j/eHGXauCFuIk3vxFYeAw5v7Dq8rArGw0+rSHCKHQlV5vVXTQsxpE gfccv3xvc8vP7DSZS+dYr2Lb5xeg8W/BAl1y/STgrGAQQKhisF8/6QxTR0pSCNguP/GAV4EtDFnxv /dqJucD9tU/G1iHjZvPR8+LKQnP/tD9jFpzq2Aa2jsU43pkUS42k8nyOP2M2EdG7TUarEzrCj96nN Nh/QqgXjSe/OBw==; Received: from [2001:660:6102:320:e120:2c8f:8909:cdfe] (helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q69qP-0000Ej-9d; Mon, 05 Jun 2023 09:01:57 -0400 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: Vinicius Monego Subject: Re: bug#63619: [PATCH 0/9] Add PyMC. References: <20230520231058.960514-1-monego@posteo.net> Date: Mon, 05 Jun 2023 15:01:55 +0200 In-Reply-To: <20230520231058.960514-1-monego@posteo.net> (Vinicius Monego's message of "Sat, 20 May 2023 23:10:58 +0000") Message-ID: <87edmqhxks.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/28.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: 63619@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Vinicius Monego skribis: > This patchset adds the PyMC probabilistic programming package. > > Vinicius Monego (9): > gnu: Add python-vega-datasets. > gnu: Add python-altair. > gnu: Add python-einops. > gnu: python-xarray: Update to 2023.5.0. > gnu: Add python-xarray-einstats. > gnu: Add python-arviz. > gnu: Add python-fastprogress. > gnu: Add python-pytensor. > gnu: Add python-pymc. Hi! From a quick glance it LGTM. is still lagging behind though. Ludo=E2=80=99. From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 08 23:50:17 2023 Received: (at 63619) by debbugs.gnu.org; 9 Jun 2023 03:50:17 +0000 Received: from localhost ([127.0.0.1]:58000 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T8i-0008Ex-Sg for submit@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:17 -0400 Received: from mout02.posteo.de ([185.67.36.66]:51955) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T8e-0008Ec-QN for 63619@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:14 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id B20B1240101 for <63619@debbugs.gnu.org>; Fri, 9 Jun 2023 05:50:06 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686282606; bh=tDCBKAzInMZ6UvumlZLhiyi+W4v9yorDI2hHpf/tFvE=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=LEFnzsoWL6w5+80CQwX5NRW07PwMW6mfPAFqDlkzsYF0kFRFEq3f9UYrIQfoZ5rq8 iHBjo4xEIUsQJYKAmdxpg83aHPlBVIKeb5IgG0nC63I61hui+kWZCoVZF2y+g6q/q+ 1zvTf0ML8ujIApXWOna0+f1ZBVn1pYnN9xR8qE73I5Zi3Zgl4UWhBWFT7DUVHbfGHu 3ZPmbJmXTE7NxouVnAbaXS/L5MgmXzWAmskgP7+ndJk/NGWF0sb4NybWmlq+vCjSAT vM3oBhq/yLU2ZdYjtRWHEq2gXiG1AmLc/5puFd/ILLJV5hCMWBXOIigPvmkN4+MsGZ WMiR6tHFz8uaA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QcnCd2KgJz6tvw; Fri, 9 Jun 2023 05:50:05 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH v2 1/9] gnu: Add python-vega-datasets. Date: Fri, 9 Jun 2023 03:49:33 +0000 Message-Id: <20230609034941.1807600-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/statistics.scm (python-vega-datasets): New variable. --- gnu/packages/statistics.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 42ee83d161..7f6dae1d67 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2062,6 +2062,26 @@ (define-public r-xtable "This package provides tools to export R data as LaTeX and HTML tables.") (license license:gpl2+))) +(define-public python-vega-datasets + (package + (name "python-vega-datasets") + (version "0.9.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "vega_datasets" version)) + (sha256 + (base32 + "1h1zv607mars2j73v8fdwihjh479blqxyw29nhmc73lf40s9iglx")))) + (build-system pyproject-build-system) + (arguments + `(#:tests? #f)) ; this is a data-only package, so no tests + (propagated-inputs (list python-pandas)) + (home-page "https://github.com/altair-viz/vega_datasets") + (synopsis "Example datasets used by Vega-related projects") + (description "This package provides a collection of datasets used in Vega +and Vega-Lite examples.") + (license license:expat))) + (define-public python-hdmedians (package (name "python-hdmedians") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 08 23:50:22 2023 Received: (at 63619) by debbugs.gnu.org; 9 Jun 2023 03:50:22 +0000 Received: from localhost ([127.0.0.1]:58004 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T8o-0008FH-D4 for submit@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:22 -0400 Received: from mout02.posteo.de ([185.67.36.66]:33487) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T8m-0008Ev-D9 for 63619@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:21 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id DC73F240101 for <63619@debbugs.gnu.org>; Fri, 9 Jun 2023 05:50:14 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686282614; bh=8s9uKm4HizTJq5exlMUJnjiVNxbQK20HkAUyoiYPWkY=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=PEwugOaIiN5ukSkEBFpAwH7ZeorxYXGYaBOCYGDwiFUzMspTamU36Cmda/YkzjEC5 mhyNKP2mdVaY90/7jK5RvtXf9fK0IPQvJIyQjxkHckmPQ/YGhke3Xji520XtctykkO H+z52KS+fvWCojzG6wFw3CSL+WCI9d5JwziC6VhAtO2W4960FK/o/QtXPwJYsdolmL d734LWEKYtQuMq9ZJKS7NDFpauFcUaop4hUhNL++lA1amoIq+lKh/+Xp/HVgVM/RmX KymuYYrjhfn0qHzdMkxeqhwIxGmJqKmOyBLp3gdtUyS6vQHI7n2beQ7CeSpMbjC6sX wSBySYqxip8uw== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QcnCn48gMz6twj; Fri, 9 Jun 2023 05:50:13 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH v2 2/9] gnu: Add python-altair. Date: Fri, 9 Jun 2023 03:49:34 +0000 Message-Id: <20230609034941.1807600-2-monego@posteo.net> In-Reply-To: <20230609034941.1807600-1-monego@posteo.net> References: <20230609034941.1807600-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/statistics.scm (python-altair): New variable. --- gnu/packages/statistics.scm | 40 +++++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 7f6dae1d67..4952e16384 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -85,6 +85,7 @@ (define-module (gnu packages statistics) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-science) #:use-module (gnu packages python-xyz) #:use-module (gnu packages readline) @@ -2082,6 +2083,45 @@ (define-public python-vega-datasets and Vega-Lite examples.") (license license:expat))) +(define-public python-altair + (package + (name "python-altair") + (version "5.0.1") + (source (origin + (method git-fetch) ; no tests in PyPI + (uri (git-reference + (url "https://github.com/altair-viz/altair") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1r74v5n51br9pjhxdzrr62cdgnwkapci93aifnl8dqmfpizfpd7d")))) + (build-system pyproject-build-system) + (arguments + ;; First two open an external connection. + ;; Last introduces a circular dependency on altair-viewer. + (list #:test-flags #~(list "-k" (string-append + "not test_from_and_to_json_roundtrip" + " and not test_render_examples_to_chart" + " and not test_save_html")))) + (propagated-inputs (list python-jinja2 + python-jsonschema + python-numpy + python-pandas + python-toolz + python-typing-extensions)) + (native-inputs (list python-black + python-hatchling + python-ipython + python-m2r + python-pytest + python-vega-datasets)) + (home-page "https://altair-viz.github.io/") + (synopsis "Declarative statistical visualization library for Python") + (description + "Vega-Altair is a declarative statistical visualization library for Python.") + (license license:expat))) + (define-public python-hdmedians (package (name "python-hdmedians") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 08 23:50:31 2023 Received: (at 63619) by debbugs.gnu.org; 9 Jun 2023 03:50:31 +0000 Received: from localhost ([127.0.0.1]:58008 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T8w-0008Fd-Tk for submit@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:31 -0400 Received: from mout02.posteo.de ([185.67.36.66]:48023) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T8u-0008FP-FG for 63619@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:29 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id ED303240101 for <63619@debbugs.gnu.org>; Fri, 9 Jun 2023 05:50:22 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686282623; bh=SZULgRpieMd3Fos6Dt7wI1pDTHO7CapzA5x3H5de8go=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=YN7R3MRQuZakaEw5vxuIG0ignUvKK6GxLIQ5TdW7Ln8wK7wTq+KKhW/gej8M1YmpK WBBqvljDh55fTEV+WUszmBl6zA7RwptE7BTAmzy1j/07oraA0zdmWbG+cXjm0xcid1 jrU7FzBM18gpG+M0uulVWWYKYw0LLlaAjF8FCBAx9XFokK6sCve5d7eraLK6fMb9vI Hop41UapaMV/JRsAZEQjXL86b3NsP5KDnFBnMJ0sLx+UwP25mRKGIHmKTUa1zfjHxk foGQ3iMecpHEQJCLWBNVzMHBAUprAGeYAi8teET8kBkVzkLU3/ezLT0JExAmL7a1Yu yK8PSEOcsmZPA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QcnCx1108z6tmv; Fri, 9 Jun 2023 05:50:20 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH v2 3/9] gnu: Add python-einops. Date: Fri, 9 Jun 2023 03:49:35 +0000 Message-Id: <20230609034941.1807600-3-monego@posteo.net> In-Reply-To: <20230609034941.1807600-1-monego@posteo.net> References: <20230609034941.1807600-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/python-science.scm (python-einops): New variable. --- gnu/packages/python-science.scm | 34 +++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 7d3319e367..91c3904783 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -669,6 +669,40 @@ (define-public python-geosketch necessary for reproducing the experiments in the paper.") (license license:expat))) +(define-public python-einops + (package + (name "python-einops") + (version "0.6.1") + (source (origin + (method git-fetch) ;PyPI misses .ipynb files required for tests + (uri (git-reference + (url "https://github.com/arogozhnikov/einops") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1h8p39kd7ylg99mh620xr20hg7v78x1jnj6vxwk31rlw2dmv2dpr")))) + (build-system pyproject-build-system) + (arguments + (list #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'set-backend + (lambda _ + ;; Einops supports different backends, but we test + ;; only NumPy for availability and simplicity. + (setenv "EINOPS_TEST_BACKENDS" "numpy")))))) + (native-inputs (list jupyter + python-hatchling + python-nbconvert + python-nbformat + python-parameterized + python-pytest)) + (propagated-inputs (list python-numpy)) + (home-page "https://einops.rocks/") + (synopsis "Tensor operations for different backends") + (description "Einops provides a set of tensor operations for NumPy and +multiple deep learning frameworks.") + (license license:expat))) + (define-public python-xarray (package (name "python-xarray") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 08 23:50:40 2023 Received: (at 63619) by debbugs.gnu.org; 9 Jun 2023 03:50:40 +0000 Received: from localhost ([127.0.0.1]:58012 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T95-0008G1-Q7 for submit@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:40 -0400 Received: from mout01.posteo.de ([185.67.36.65]:48887) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T94-0008Fm-3r for 63619@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:38 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 9373C240027 for <63619@debbugs.gnu.org>; Fri, 9 Jun 2023 05:50:32 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686282632; bh=lVytK6/noGHtT9xxcUJ01EYy1oFl30rq8+eotg9rY/8=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=pg8RX8oWkctc59/ux72ku/EE1a/yAQlEynvJUdsAF+3V4DNtVTqIelnBfr/ZmOYdt p5UPuNsui2etj0xH2dJ/5lEoCXD8XI87F9Qt0cAJhHQ8EZmFJIaDAiD8Lxi+qcahad nt+IXC+1wjhI0CHl8tC3wUzHizWDQWLzIUN0FAcvikF8tApnw4GUCx+crMK38dIqna 4qXE0D3dRrGshCO8r7+BGGpOFNdNK0xU529GhkR9hmO/g+YMaKRMk8lDBgFhFDPvah RhcrAibSt612UFlM0pWHcA78cvXY7jUsZhs+s+mm8vBa7UWRPP2krqzL/HgXxki+O7 yRFPoktsYpDJw== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QcnD748f2z6twj; Fri, 9 Jun 2023 05:50:31 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH v2 4/9] gnu: python-xarray: Update to 2023.5.0. Date: Fri, 9 Jun 2023 03:49:36 +0000 Message-Id: <20230609034941.1807600-4-monego@posteo.net> In-Reply-To: <20230609034941.1807600-1-monego@posteo.net> References: <20230609034941.1807600-1-monego@posteo.net> MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/python-science.scm (python-xarray): Update to 2023.5.0. [build-system]: Switch to pyproject-build-system. [arguments]: Don't override the check phase. --- gnu/packages/python-science.scm | 14 ++++---------- 1 file changed, 4 insertions(+), 10 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 91c3904783..468da66a2b 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -9,7 +9,7 @@ ;;; Copyright © 2019, 2021, 2022, 2023 Maxim Cournoyer ;;; Copyright © 2019 Giacomo Leidi ;;; Copyright © 2020 Pierre Langlois -;;; Copyright © 2020, 2021, 2022 Vinicius Monego +;;; Copyright © 2020, 2021, 2022, 2023 Vinicius Monego ;;; Copyright © 2021 Greg Hogan ;;; Copyright © 2021 Roel Janssen ;;; Copyright © 2021 Paul Garlick @@ -706,24 +706,18 @@ (define-public python-einops (define-public python-xarray (package (name "python-xarray") - (version "0.15.1") + (version "2023.5.0") (source (origin (method url-fetch) (uri (pypi-uri "xarray" version)) (sha256 (base32 - "1yx8j66b7rn10m2l6gmn8yr9cn38pi5cj0x0wwpy4hdnhy6i7qv4")))) - (build-system python-build-system) + "1s05ykxbhid8q0wbdns3kksdbbmxv47asmqwgp5wxfc284gnb2ii")))) + (build-system pyproject-build-system) (native-inputs (list python-setuptools-scm python-pytest)) (propagated-inputs (list python-numpy python-pandas)) - (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda _ - (invoke "pytest")))))) (home-page "https://github.com/pydata/xarray") (synopsis "N-D labeled arrays and datasets") (description "Xarray (formerly xray) makes working with labelled -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 08 23:50:48 2023 Received: (at 63619) by debbugs.gnu.org; 9 Jun 2023 03:50:48 +0000 Received: from localhost ([127.0.0.1]:58016 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9E-0008GP-96 for submit@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:48 -0400 Received: from mout01.posteo.de ([185.67.36.65]:54613) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9B-0008G8-Ho for 63619@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:46 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 08DA6240027 for <63619@debbugs.gnu.org>; Fri, 9 Jun 2023 05:50:40 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686282640; bh=0ptGnDAWOx+DMMdK9eo5LyxWzCYZK8Rxfx3qOKZYIZs=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=jUcAoEqJE9Ty4TMsYbC93TPwvSfW3ogvGSS0psG7JSKweTZYi45UlndAYq49JP3h/ 1hjEZNcysQ7tWfiFY9FHVYOHIXXKJdaXEj6tzNssYEkciG9AJG8GPOle+jZCwyG+s+ DEwjuXdQavTw/nT4YKC10HvQfVPbjpresIM9Z8RpCrjH4gii4ZdzpX0FrXi+9oPjP3 US7z3tV1MQbnziDqL/DXuWTFgFTaMF7FYqvTH++MSEqVmnJUHpL4tkUw+bXuYg7dXT hpVlY/ReNyJZSCBlKFvzZLxCMqwPFENsO6fXSEogPfHjdff6M/aDILICD9wlH5wqTx RqqO8Sjrq+2sA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QcnDF04Qhz6tmv; Fri, 9 Jun 2023 05:50:36 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH v2 5/9] gnu: Add python-xarray-einstats. Date: Fri, 9 Jun 2023 03:49:37 +0000 Message-Id: <20230609034941.1807600-5-monego@posteo.net> In-Reply-To: <20230609034941.1807600-1-monego@posteo.net> References: <20230609034941.1807600-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/python-science.scm (python-xarray-einstats): New variable. --- gnu/packages/python-science.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 468da66a2b..d076c877fc 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -730,6 +730,30 @@ (define-public python-xarray and visualization with these data structures.") (license license:asl2.0))) +(define-public python-xarray-einstats + (package + (name "python-xarray-einstats") + (version "0.5.1") + (source (origin + (method git-fetch) ; no tests in PyPI + (uri (git-reference + (url "https://github.com/arviz-devs/xarray-einstats") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1gg7p2lq7zxic64nbr6a8ynizs8rjzb29fnqib7hw3lmp13wsfm0")))) + (build-system pyproject-build-system) + (native-inputs (list python-einops python-flit-core python-numba + python-pytest)) + (propagated-inputs (list python-numpy python-scipy python-xarray)) + (home-page "https://einstats.python.arviz.org/en/latest/") + (synopsis "Stats, linear algebra and einops for xarray") + (description + "@code{xarray_einstats} provides wrappers around some NumPy and SciPy +functions and around einops with an API and features adapted to xarray.") + (license license:asl2.0))) + (define-public python-msgpack-numpy (package (name "python-msgpack-numpy") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 08 23:50:53 2023 Received: (at 63619) by debbugs.gnu.org; 9 Jun 2023 03:50:53 +0000 Received: from localhost ([127.0.0.1]:58020 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9I-0008Gg-K5 for submit@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:52 -0400 Received: from mout02.posteo.de ([185.67.36.66]:41017) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9G-0008GD-9u for 63619@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:51 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id C3759240101 for <63619@debbugs.gnu.org>; Fri, 9 Jun 2023 05:50:44 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686282644; bh=q4da8FepNVI2WVzhLfhQCkD2/njCbYqQ3DtTyN4JOmo=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=mzVki8J5TFIE6DZa6ni7wt5wkJgEXROsl+jCrnK+er+AVdGSG155Pppnf+T3IS6AT nn105qrXuBHy5dUd5BiB98m9apc0RKNhZe+Yp3pm0ChyuHxmYZarRuVoFeme5L8h2d nTahZ8SW6o5mmxxdw9HSk16hTGsqC4ztoUGLu1ZrZ68rpX6y3xwghOBQRBwxhoymf9 T94T4JfSlphWGv96By5MP9vm9IV02QvwptR3qq3g+jIkY0PUKemWSUhVMxToucGQfg ru2rTKfKuc8O9l+a9bL6zG9i067r1fx1C5O5Q96aGs9v+suMYiT0t+ZwIfILYWnYjv wWE1Sf3npJ0BQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QcnDM45Vzz6tvw; Fri, 9 Jun 2023 05:50:43 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH v2 6/9] gnu: Add python-arviz. Date: Fri, 9 Jun 2023 03:49:38 +0000 Message-Id: <20230609034941.1807600-6-monego@posteo.net> In-Reply-To: <20230609034941.1807600-1-monego@posteo.net> References: <20230609034941.1807600-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/statistics.scm (python-arviz): New variable. --- gnu/packages/statistics.scm | 41 +++++++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 4952e16384..0a2ca7ced2 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2152,6 +2152,47 @@ (define-public python-hdmedians machine learning, computer vision, and high-dimensional statistics.") (license license:asl2.0))) +(define-public python-arviz + (package + (name "python-arviz") + (version "0.15.1") + (source (origin + (method git-fetch) ; PyPI misses some test files + (uri (git-reference + (url "https://github.com/arviz-devs/arviz") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0nqr4v927r9kc50z7rwlk2m8nw3dnnmmwmwcfijzd93gbg53wc4f")))) + (build-system pyproject-build-system) + (arguments + ;; FIXME: matplotlib tests fail because of the "--save" test flag. + (list #:test-flags #~'("--ignore" + "arviz/tests/base_tests/test_plots_matplotlib.py") + #:phases #~(modify-phases %standard-phases + (add-before 'check 'write-permission + (lambda _ + ;; 3 tests require write permission. + (setenv "HOME" "/tmp")))))) + (native-inputs (list python-cloudpickle python-pytest)) + (propagated-inputs (list python-h5netcdf + python-matplotlib + python-numpy + python-packaging + python-pandas + python-scipy + python-typing-extensions + python-xarray + python-xarray-einstats)) + (home-page "https://github.com/arviz-devs/arviz") + (synopsis "Exploratory analysis of Bayesian models") + (description + "ArviZ is a Python package for exploratory analysis of Bayesian models. +It includes functions for posterior analysis, data storage, model checking, +comparison and diagnostics.") + (license license:asl2.0))) + (define-public python-patsy (package (name "python-patsy") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 08 23:50:56 2023 Received: (at 63619) by debbugs.gnu.org; 9 Jun 2023 03:50:56 +0000 Received: from localhost ([127.0.0.1]:58024 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9M-0008Gw-0Y for submit@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:56 -0400 Received: from mout02.posteo.de ([185.67.36.66]:54685) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9K-0008GY-VG for 63619@debbugs.gnu.org; Thu, 08 Jun 2023 23:50:55 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 68F78240101 for <63619@debbugs.gnu.org>; Fri, 9 Jun 2023 05:50:49 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686282649; bh=kcRmTFEGj2N42DQiZBp8PIV74ka5120dQIfp5YeRWKg=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=Igx7E7Uy/66jH1JCsiolD6TCqqcuv8dIusEwITOhzwQ28kTux07BX06qfxGPW1juM WDyqJAhEZpoMpb8xXOdtpjFaMRIxJWE0XnMH+wgD3/LKAqE3WjcLmwBYPEjbSa8PJO ICMGNGTu2V2gf4e5/GsPdGg5+zkyxZF8DsvOgXq88V01StJb+YOJ6NVNLV6MwfVwPG vwgNZs8JAbzQNM5+ANcashD/c88rLdRe38/umwa75tppoyqN1N4BPYZsGhJAB+JN1x mpjLrOjEpsQh2VG3BAuESq6FbR3zlYPY5axCxfIi3idmQq09pRaLmSc/L8FD20m1UP cucpfEdz6mrTA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QcnDS0Mc0z6tvw; Fri, 9 Jun 2023 05:50:47 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH v2 7/9] gnu: Add python-fastprogress. Date: Fri, 9 Jun 2023 03:49:39 +0000 Message-Id: <20230609034941.1807600-7-monego@posteo.net> In-Reply-To: <20230609034941.1807600-1-monego@posteo.net> References: <20230609034941.1807600-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/python-xyz.scm (python-fastprogress): New variable. --- gnu/packages/python-xyz.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index efac1130a9..7798bf20ce 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -3041,6 +3041,32 @@ (define-public python-capturer for additional processing.") (license license:expat))) +(define-public python-fastprogress + (package + (name "python-fastprogress") + (version "1.0.3") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/fastai/fastprogress") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "01h8f786wgmmd3fj98wk1n5id67nsp19gs8bbgims04aciwhvj21")))) + (build-system pyproject-build-system) + (arguments + (list #:tests? #f ;there are no tests + #:phases #~(modify-phases %standard-phases + ;; XXX: Fails with: "In procedure utime: No such file + ;; or directory". + (delete 'ensure-no-mtimes-pre-1980)))) + (home-page "https://github.com/fastai/fastprogress") + (synopsis "Progress bar for Jupyter Notebook and console") + (description + "Fastprogress is a progress bar for Jupyter Notebook and console.") + (license license:asl2.0))) + (define-public python-case (package (name "python-case") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 08 23:51:01 2023 Received: (at 63619) by debbugs.gnu.org; 9 Jun 2023 03:51:01 +0000 Received: from localhost ([127.0.0.1]:58028 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9R-0008HM-BO for submit@debbugs.gnu.org; Thu, 08 Jun 2023 23:51:01 -0400 Received: from mout01.posteo.de ([185.67.36.65]:51229) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9P-0008Gp-P5 for 63619@debbugs.gnu.org; Thu, 08 Jun 2023 23:51:00 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 2BBB6240027 for <63619@debbugs.gnu.org>; Fri, 9 Jun 2023 05:50:54 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686282654; bh=ZNt4suJqbirNTX+/7SAiQmpqs1ur+hGUVj75pLsjq/o=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=rbBNxE+fVEuxSmSALnclrWU8aJotzB9efpT15ITt6maBSO18dhUvlXzzpkY2r8Vla +FZw9PC2Oswo5MvwoO8gRec06UiCOAsosTgwruwWRTgKCAObO8YzxFoPA7D+JDfj/Q V2VmkPbHs/9M1Yb+IemlZnNN+KTNhiQh4ryEldRURQKIBgcPEtZW4fGHtxmJk9BeRG iOTeQMScuSZwz7dJxLYfsTbdTyTEzcSwotlHyfgyJrQzk4iNz7oIkGgGu0ZekmdYul Du6Xag2Azg4AJLP9FKxsG3ckiTcL78bJUlgmgbCwcKB03rBEtTRvKmWCweNBlpw6te /8Irp4PKhpZ1w== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QcnDY2FV9z6tvw; Fri, 9 Jun 2023 05:50:53 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH v2 8/9] gnu: Add python-pytensor. Date: Fri, 9 Jun 2023 03:49:40 +0000 Message-Id: <20230609034941.1807600-8-monego@posteo.net> In-Reply-To: <20230609034941.1807600-1-monego@posteo.net> References: <20230609034941.1807600-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/python-science.scm (python-pytensor): New variable. --- gnu/packages/python-science.scm | 76 +++++++++++++++++++++++++++++++++ 1 file changed, 76 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index d076c877fc..fb2ea0c3b5 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -754,6 +754,82 @@ (define-public python-xarray-einstats functions and around einops with an API and features adapted to xarray.") (license license:asl2.0))) +(define-public python-pytensor + (package + (name "python-pytensor") + (version "2.12.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pymc-devs/pytensor") + (commit (string-append "rel-" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1yrzc6idbpvxs7xfmrpbnawz854yq73l7nc6yxdyg0l273ip3jsz")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + ;; Replace version manually because pytensor uses + ;; versioneer, which requires git metadata. + (add-after 'unpack 'versioneer + (lambda _ + (with-output-to-file "setup.cfg" + (lambda () + (display "\ +[versioneer] +VCS = git +style = pep440 +versionfile_source = pytensor/_version.py +versionfile_build = pytensor/_version.py +tag_prefix = +parentdir_prefix = pytensor- +"))) + (invoke "versioneer" "install") + (substitute* "setup.py" + (("versioneer.get_version\\(\\)") + (string-append "\"" #$version "\""))))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; Test discovery fails, have to call pytest by hand. + ;; test_tensor_basic.py file requires JAX. + (invoke "python" "-m" "pytest" "-vv" + "--ignore" "tests/link/jax/test_tensor_basic.py" + ;; Skip benchmark tests. + "-k" (string-append + "not test_elemwise_speed" + " and not test_logsumexp_benchmark" + " and not test_fused_elemwise_benchmark" + " and not test_scan_multiple_output" + " and not test_vector_taps_benchmark" + " and not test_cython_performance") + ;; Skip computationally intensive tests. + "--ignore" "tests/scan/" + "--ignore" "tests/tensor/" + "--ignore" "tests/sandbox/" + "--ignore" "tests/sparse/sandbox/"))))))) + (native-inputs (list python-cython python-pytest python-versioneer)) + (propagated-inputs (list python-cons + python-etuples + python-filelock + python-logical-unification + python-minikanren + python-numba + python-numpy + python-scipy + python-typing-extensions)) + (home-page "https://pytensor.readthedocs.io/en/latest/") + (synopsis + "Library for mathematical expressions in multi-dimensional arrays") + (description + "PyTensor is a Python library that allows one to define, +optimize, and efficiently evaluate mathematical expressions involving +multi-dimensional arrays. It is a fork of the Aesara library.") + (license license:bsd-3))) + (define-public python-msgpack-numpy (package (name "python-msgpack-numpy") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jun 08 23:51:06 2023 Received: (at 63619) by debbugs.gnu.org; 9 Jun 2023 03:51:06 +0000 Received: from localhost ([127.0.0.1]:58040 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9V-0008Ij-RN for submit@debbugs.gnu.org; Thu, 08 Jun 2023 23:51:06 -0400 Received: from mout01.posteo.de ([185.67.36.65]:43609) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9U-0008H7-3t for 63619@debbugs.gnu.org; Thu, 08 Jun 2023 23:51:04 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 94D83240027 for <63619@debbugs.gnu.org>; Fri, 9 Jun 2023 05:50:58 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686282658; bh=QRqR+HvFXZptWEUof+n66vfq2coFxUJH7TttYFk9Btc=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=TaCkkJGrc0sp+EOV6r8ff2Z8+i0UDIT8ETz3zR5Hu0I8V4VKHfCKqP2WEFp7SFJWy +yHu1nVAxfSkrlX9Pw9v854XRCWisi3/tgaYMcSKMWOA30PF38gzeG5pydWGH18dCV XAKjPTaWtxCtM9ARc9PKcH6WckeJAhTjt8NM3ndBDQGvcuuQT+olrZ+FIZ1s0oybm4 O0hI2+NHGwQ8zYHQAZOir4MLUtKER9UkQ4v4+5hSYz0WOnVx++0LmHTtGxUkRkK34k bXjrLRhmnMF0hggMF2uTsQD9WPyMQpodanhg0s9rS2KRKy/XVlG1OLkhkTG3ta6PRD /JK4W0B7QD5+g== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QcnDd1TbNz6tmv; Fri, 9 Jun 2023 05:50:56 +0200 (CEST) From: Vinicius Monego To: 63619@debbugs.gnu.org Subject: [PATCH v2 9/9] gnu: Add python-pymc. Date: Fri, 9 Jun 2023 03:49:41 +0000 Message-Id: <20230609034941.1807600-9-monego@posteo.net> In-Reply-To: <20230609034941.1807600-1-monego@posteo.net> References: <20230609034941.1807600-1-monego@posteo.net> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: Vinicius Monego X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/statistics.scm (python-pymc): New variable. --- gnu/packages/statistics.scm | 57 +++++++++++++++++++++++++++++++++++++ 1 file changed, 57 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 0a2ca7ced2..c2dbfbb64a 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2193,6 +2193,63 @@ (define-public python-arviz comparison and diagnostics.") (license license:asl2.0))) +(define-public python-pymc + (package + (name "python-pymc") + (version "5.4.1") + (source (origin + (method git-fetch) ; no tests in PyPI + (uri (git-reference + (url "https://github.com/pymc-devs/pymc") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1ihx4r7z2lllcakl63dfgskhyk6kns5qp6fi1xf9bhzdy1wbwfls")))) + (build-system pyproject-build-system) + (arguments + (list #:tests? #f ; tests are too computationally intensive + #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'versioneer + (lambda _ + (with-output-to-file "setup.cfg" + (lambda () + (display "\ +[versioneer] +VCS = git +style = pep440 +versionfile_source = pymc/_version.py +versionfile_build = pymc/_version.py +tag_prefix = +parentdir_prefix = pymc- +"))) + (invoke "versioneer" "install") + (substitute* "setup.py" + (("versioneer.get_version\\(\\)") + (string-append "\"" #$version "\""))))) + ;; To create the compiledir for tests. + (add-before 'check 'write-permissions + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "HOME" "/tmp"))))))) + (native-inputs (list python-pytest-cov python-versioneer)) + (propagated-inputs (list python-arviz + python-cachetools + python-cloudpickle + python-fastprogress + python-numpy + python-pandas + python-pytensor + python-scipy + python-typing-extensions)) + (home-page "https://github.com/pymc-devs/pymc") + (synopsis "Library for probabilistic programming in Python") + (description + "PyMC (formerly PyMC3) is a Python package for Bayesian +statistical modeling focusing on advanced Markov chain Monte Carlo (MCMC) and +variational inference (VI) algorithms.") + (license license:asl2.0))) + (define-public python-patsy (package (name "python-patsy") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Jun 09 00:10:35 2023 Received: (at 63619) by debbugs.gnu.org; 9 Jun 2023 04:10:35 +0000 Received: from localhost ([127.0.0.1]:58109 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7TSN-0000PV-8B for submit@debbugs.gnu.org; Fri, 09 Jun 2023 00:10:35 -0400 Received: from mout01.posteo.de ([185.67.36.65]:40225) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7TSK-0000PE-KU for 63619@debbugs.gnu.org; Fri, 09 Jun 2023 00:10:33 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id BC966240027 for <63619@debbugs.gnu.org>; Fri, 9 Jun 2023 06:10:26 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686283826; bh=TT5bAJMLFXoJpmvD4WJ2PX1AT0oylg1MeAxY+UMV86k=; h=Message-ID:Subject:From:To:Cc:Date:Content-Transfer-Encoding: MIME-Version:From; b=fNfRo5rbfJHN44vtwlYipvp3AQHiTDhCSShbjrPmU2wsv/YAHcgX3ME1s9MDoRk1V VtqMc8n1ySk588CC0nCMxG6bh66+PcW5tMf8Ho7pVGz32RWjJ9KwUOi+W8jCChsbti LOn7/eAy/UkaQvKsIxLeHwMk8Eaip/8cZ1EhyiE1l6EIGU50IT7VjlWtc1R06HX7j5 h2YOqHIBUvB3d+HbGp3VruAwcAp5MdS2Kdp6oM5R0wlGYlUBQjKbYrLuwVW3OA1HhF of6HeNlfeKB/ReLqLdKDyEJUqpwkQwloVSNl9ekdQNSCm1DNc0mM9iCtOTp4ebwONG FvusAnOkWZB5w== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4Qcng51jmLz6tn4; Fri, 9 Jun 2023 06:10:24 +0200 (CEST) Message-ID: <88026a0614aad271fccdbe356411876837a5b62a.camel@posteo.net> Subject: Re: bug#63619: [PATCH 0/9] Add PyMC. From: Vinicius Monego To: Ludovic =?ISO-8859-1?Q?Court=E8s?= Date: Fri, 09 Jun 2023 04:10:16 +0000 In-Reply-To: <87edmqhxks.fsf@gnu.org> References: <20230520231058.960514-1-monego@posteo.net> <87edmqhxks.fsf@gnu.org> Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: 63619@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Em seg, 2023-06-05 =C3=A0s 15:01 +0200, Ludovic Court=C3=A8s escreveu: [...] > Hi!=C2=A0 From a quick glance it LGTM. >=20 > is still lagging behind though. >=20 > Ludo=E2=80=99. Hi, I finally understood Versioneer, and fixed the version reporting in pytensor and pymc. I also updated some of the packages and now pytensor correctly installs "Faddeeva.h". My last question would be about the python-vega-datasets package. The dataset licenses must be "MIT compatible", I'm not sure whether that implies FSDG compatibility. Some of them do not mention the license: https://github.com/altair-viz/vega_datasets/blob/master/vega_datasets/datas= et_info.json Developer acknowledges that the provenance of the datasets is difficult to trace: https://github.com/altair-viz/vega_datasets/issues/1#issue-288302709 If it's not a problem, then I can push it soon. And I just noticed that there are tests in this package, they will be enabled before pushing. From debbugs-submit-bounces@debbugs.gnu.org Wed Jun 14 17:05:25 2023 Received: (at 63619) by debbugs.gnu.org; 14 Jun 2023 21:05:25 +0000 Received: from localhost ([127.0.0.1]:45541 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q9XgC-0004kp-Ng for submit@debbugs.gnu.org; Wed, 14 Jun 2023 17:05:25 -0400 Received: from eggs.gnu.org ([209.51.188.92]:50334) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q9XgA-0004kX-44 for 63619@debbugs.gnu.org; Wed, 14 Jun 2023 17:05:23 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q9Xg4-0003yq-QY; Wed, 14 Jun 2023 17:05:16 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:In-Reply-To:Date:References:Subject:To: From; bh=4fgnbI3u8iAXRC/m/RlPCNirXMFLnyat0kzNxpBu3OM=; b=htIOOVMzePJTkGiTJ5Lp Hn0hrtYyK4keWmOIP7wt0Ypcq4ZuDHrVEgLCYNvM9Wm7/uZYU/aNSxvV9a6u3gCNRz1ay+6fLmRTe mzIR1ukLkk2KZI6tmW5HvFB+jWv8pz4juupi96eCKtSjMRP9XJe7dM5/2PAbOLrg2xl/KMytOZCP5 Kl7ovpBWAfHJCFqSzncwK1Tjb7SZ+MXXeLJveLSd6nHkKBWGWqa1pJVWrWJcYeTTQ0cuMTet272Ze U2HXu3ZQ+JUQTYD6ZO4fDAToUK+0fWKsStmwd3CY7OIMxqnrXStKTZ197NGVGjZYI4AFdYp2vNXRv eCDmUioIsHlHUw==; Received: from 91-160-117-201.subs.proxad.net ([91.160.117.201] helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q9Xg4-0001Au-Dg; Wed, 14 Jun 2023 17:05:16 -0400 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: Vinicius Monego Subject: Re: bug#63619: [PATCH 0/9] Add PyMC. References: <20230520231058.960514-1-monego@posteo.net> <87edmqhxks.fsf@gnu.org> <88026a0614aad271fccdbe356411876837a5b62a.camel@posteo.net> Date: Wed, 14 Jun 2023 23:05:14 +0200 In-Reply-To: <88026a0614aad271fccdbe356411876837a5b62a.camel@posteo.net> (Vinicius Monego's message of "Fri, 09 Jun 2023 04:10:16 +0000") Message-ID: <87ttv9rbzp.fsf_-_@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/28.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: 63619@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hi, Vinicius Monego skribis: > My last question would be about the python-vega-datasets package. The > dataset licenses must be "MIT compatible", I'm not sure whether that > implies FSDG compatibility. Some of them do not mention the license: > > https://github.com/altair-viz/vega_datasets/blob/master/vega_datasets/dat= aset_info.json > > Developer acknowledges that the provenance of the datasets is difficult > to trace: > https://github.com/altair-viz/vega_datasets/issues/1#issue-288302709 > > If it's not a problem, then I can push it soon. And I just noticed that > there are tests in this package, they will be enabled before pushing. Lack of licensing and provenance information is usually not a good sign. What did Debian do, for example? Note that FSDG is more lax than Debian when it comes to =E2=80=9CNon-functi= onal data=E2=80=9D=C2=B9. Thanks, Ludo=E2=80=99. =C2=B9 https://www.gnu.org/distros/free-system-distribution-guidelines.html From debbugs-submit-bounces@debbugs.gnu.org Wed Jun 14 18:47:16 2023 Received: (at 63619) by debbugs.gnu.org; 14 Jun 2023 22:47:16 +0000 Received: from localhost ([127.0.0.1]:45744 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q9ZGm-000462-3v for submit@debbugs.gnu.org; Wed, 14 Jun 2023 18:47:16 -0400 Received: from mout01.posteo.de ([185.67.36.65]:41701) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q9ZGk-00045p-EU for 63619@debbugs.gnu.org; Wed, 14 Jun 2023 18:47:15 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 9866F240027 for <63619@debbugs.gnu.org>; Thu, 15 Jun 2023 00:47:08 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686782828; bh=Y+gDYK57IXQCz5d36QsRRCH1wNVhKBk66XENmtJ9hRc=; h=Message-ID:Subject:From:To:Cc:Date:Content-Transfer-Encoding: MIME-Version:From; b=QJYC2rW5ZJAFq9FvSfenWW3voExyJ43bAybT4Mu7496UkX6nm5mZJLqlDN2zqeiLw bJ+b2Z4t50kArnl8bkKpwu76QvhDp1Qm24HfCWXfK5c1eT8Qir7BgrI7vhrPzQh7bL wrJ5DBa7ajBLFiv1J9d8xuRrp4vD0MlmKq69MD8pczIeYf7IE9cwpvDpGiVUz64cAO AD8P5xI5vVQ9KgMfQXm60RVTwzYomEZUVXx/j95BYvwFRf8/p0s8F12KUCGbjk1m0O fN4nquTJTkCsf9O1fEHx9LQx8UbZggGAc74ad9kswNRP2HEVxMClcfH5nHwmebkssm fcgiK3GCkm6NQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QhLCG4Xssz9rxH; Thu, 15 Jun 2023 00:47:06 +0200 (CEST) Message-ID: Subject: Re: bug#63619: [PATCH 0/9] Add PyMC. From: Vinicius Monego To: Ludovic =?ISO-8859-1?Q?Court=E8s?= Date: Wed, 14 Jun 2023 22:46:45 +0000 In-Reply-To: <87ttv9rbzp.fsf_-_@gnu.org> References: <20230520231058.960514-1-monego@posteo.net> <87edmqhxks.fsf@gnu.org> <88026a0614aad271fccdbe356411876837a5b62a.camel@posteo.net> <87ttv9rbzp.fsf_-_@gnu.org> Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: 63619@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Em qua, 2023-06-14 =C3=A0s 23:05 +0200, Ludovic Court=C3=A8s escreveu: [...] > Lack of licensing and provenance information is usually not a good > sign.=C2=A0 What did Debian do, for example? >=20 > Note that FSDG is more lax than Debian when it comes to =E2=80=9CNon- > functional > data=E2=80=9D=C2=B9. >=20 > Thanks, > Ludo=E2=80=99. >=20 > =C2=B9 > https://www.gnu.org/distros/free-system-distribution-guidelines.html Debian has a patch to remove the "L.A. Riots" dataset with the following justification: > vega_datasets/_data/la-riots.csv is removed since the license is not > clear and the file is not currently available from Los Angeles Times > for European users. So they don't seem to have a problem with the licenses of the other datasets. Vinicius From debbugs-submit-bounces@debbugs.gnu.org Wed Jun 21 17:48:19 2023 Received: (at 63619) by debbugs.gnu.org; 21 Jun 2023 21:48:19 +0000 Received: from localhost ([127.0.0.1]:34320 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qC5gY-0004bX-Sm for submit@debbugs.gnu.org; Wed, 21 Jun 2023 17:48:19 -0400 Received: from eggs.gnu.org ([209.51.188.92]:34370) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qC5gW-0004al-Qf for 63619@debbugs.gnu.org; Wed, 21 Jun 2023 17:48:17 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qC5gQ-0003EA-Rb; Wed, 21 Jun 2023 17:48:10 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:In-Reply-To:Date:References:Subject:To: From; bh=F5dNNSbcCmfbArZmsiJKlNIYX5qf5eqa6lEnuHLfrvg=; b=ppRVlqE8ldxhw5i0tVM9 uX0T1kN1k98CN4H3OgbrCpDPFlfASK+TuKC1W7CpdGaMKgCz7QX/AMGEfCXqVqokBBhI3HlWZsczD m18idoamYUZ/nlEJAqVlOKjZ/u7BdFGuU8S7cRFZXLtlUbPrIR0c/EtlqYCx8CRuhei2MYUfx9SgD kI4wjG8HWLndwYjbR/0ZMQhi56SQo5OsR76Cf6VMt2Hvd5csUdWbQPAc5woqjPtZ3NUt7dBcWRe3q uuTdgSEA9JQB7BUAg+D0vvF5rqWU/aW1Zw+ilnA81NyehyxJVy0urRwYP4Xf0rXn5do61S6T1vPXJ +af7nGutSn79zg==; Received: from lsm-cpl.in2p3.fr ([134.158.178.2] helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qC5gQ-0007Nn-Du; Wed, 21 Jun 2023 17:48:10 -0400 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: Vinicius Monego Subject: Re: bug#63619: [PATCH 0/9] Add PyMC. References: <20230520231058.960514-1-monego@posteo.net> <87edmqhxks.fsf@gnu.org> <88026a0614aad271fccdbe356411876837a5b62a.camel@posteo.net> <87ttv9rbzp.fsf_-_@gnu.org> X-URL: http://www.fdn.fr/~lcourtes/ X-Revolutionary-Date: Tridi 3 Messidor an 231 de la =?utf-8?Q?R=C3=A9volut?= =?utf-8?Q?ion=2C?= jour de l'Oignon X-PGP-Key-ID: 0x090B11993D9AEBB5 X-PGP-Key: http://www.fdn.fr/~lcourtes/ludovic.asc X-PGP-Fingerprint: 3CE4 6455 8A84 FDC6 9DB4 0CFB 090B 1199 3D9A EBB5 X-OS: x86_64-pc-linux-gnu Date: Wed, 21 Jun 2023 23:48:06 +0200 In-Reply-To: (Vinicius Monego's message of "Wed, 14 Jun 2023 22:46:45 +0000") Message-ID: <87mt0s5vxl.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/28.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: 63619@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hi, Vinicius Monego skribis: > Debian has a patch to remove the "L.A. Riots" dataset with the > following justification: > >> vega_datasets/_data/la-riots.csv is removed since the license is not >> clear and the file is not currently available from Los Angeles Times >> for European users. > > So they don't seem to have a problem with the licenses of the other > datasets. OK, good to know. So I=E2=80=99d say you can keep them, adding links to the relevant discussions for future reference. Thanks, Ludo=E2=80=99. From debbugs-submit-bounces@debbugs.gnu.org Sun Jun 25 10:02:02 2023 Received: (at 63619-done) by debbugs.gnu.org; 25 Jun 2023 14:02:02 +0000 Received: from localhost ([127.0.0.1]:43202 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qDQJW-0001FQ-4F for submit@debbugs.gnu.org; Sun, 25 Jun 2023 10:02:02 -0400 Received: from mout01.posteo.de ([185.67.36.65]:42419) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qDQJQ-0001Ep-ST for 63619-done@debbugs.gnu.org; Sun, 25 Jun 2023 10:02:00 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id ED004240027 for <63619-done@debbugs.gnu.org>; Sun, 25 Jun 2023 16:01:50 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1687701711; bh=oQJcUCYhLaSsb4FMX9w1X9OtoyEomTAL4/VSmLL4pJ0=; h=Message-ID:Subject:From:To:Cc:Date:Content-Transfer-Encoding: MIME-Version:From; b=AakCMfP53PrCdK43mEymPOzcbSlvbvlD6veW0WxP74iH+ogrID5MfoXJI8cxBGhjZ 3OVpRZ+6k7ub5fQ4ouuA7YvlUaA13W+YDo5UdCTceme+PfCE1P8jaUQOvN7N8/HaZV 2is4JUkpZtpRDriQ7mh+WpYdZk81cvviMX/oExdsBPHwT3ma25//4ueiAl5T+pT0ln Bqon70MlR1+Wd5eTyYKbVjaWgkxpPT+0254Cz0MGxrRnaz/0XcL6IRGAYITK2Mb4D8 y6zWfW9TscQattb96AFQe4G48+0huv6mo6uvZ7sHRJKloV5n6SBJ7d+iiQOU8xmO4y YNs7F2ayw9oxQ== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4Qpt251Yjjz6twK; Sun, 25 Jun 2023 16:01:48 +0200 (CEST) Message-ID: <1b55db71bfe48975237a7f73cd4920366265e619.camel@posteo.net> Subject: Re: bug#63619: [PATCH 0/9] Add PyMC. From: Vinicius Monego To: Ludovic =?ISO-8859-1?Q?Court=E8s?= Date: Sun, 25 Jun 2023 14:01:34 +0000 In-Reply-To: <87mt0s5vxl.fsf@gnu.org> References: <20230520231058.960514-1-monego@posteo.net> <87edmqhxks.fsf@gnu.org> <88026a0614aad271fccdbe356411876837a5b62a.camel@posteo.net> <87ttv9rbzp.fsf_-_@gnu.org> <87mt0s5vxl.fsf@gnu.org> Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619-done Cc: 63619-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Em qua, 2023-06-21 =C3=A0s 23:48 +0200, Ludovic Court=C3=A8s escreveu: > Hi, >=20 > Vinicius Monego skribis: >=20 > > Debian has a patch to remove the "L.A. Riots" dataset with the > > following justification: > >=20 > > > vega_datasets/_data/la-riots.csv is removed since the license is > > > not > > > clear and the file is not currently available from Los Angeles > > > Times > > > for European users. > >=20 > > So they don't seem to have a problem with the licenses of the other > > datasets. >=20 > OK, good to know.=C2=A0 So I=E2=80=99d say you can keep them, adding link= s to the > relevant discussions for future reference. >=20 > Thanks, > Ludo=E2=80=99. Thanks for the review. Applied with the patch imported from Debian. Vinicius From unknown Thu Jun 19 14:03:21 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Mon, 24 Jul 2023 11:24:04 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator