GNU bug report logs - #63275
[PATCH] gnu: Add r-multibac.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#63275: closed ([PATCH] gnu: Add r-multibac.)
Date: Mon, 08 May 2023 09:17:02 +0000

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Your message dated Mon, 08 May 2023 11:15:42 +0200
with message-id <87zg6fw5dh.fsf <at> elephly.net>
and subject line [PATCH] gnu: Add r-multibac.
has caused the debbugs.gnu.org bug report #63275,
regarding [PATCH] gnu: Add r-multibac.
to be marked as done.

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help-debbugs <at> gnu.org.)


-- 
63275: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=63275
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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-multibac.
Date: Thu, 4 May 2023 17:46:40 +0200

* gnu/packages/bioconductor.scm (r-multibac): New variable.
---
 gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 768b55b25e..299d772bd2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10101,6 +10101,37 @@ (define-public r-mbkmeans
 large datasets, including support for on-disk data representation.")
     (license license:expat)))
 
+(define-public r-multibac
+  (package
+    (name "r-multibac")
+    (version "1.10.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "MultiBaC" version))
+       (sha256
+        (base32 "1qwf1mvw81hb929xpnx5x910f7qnax9lkylhwzcdw1814s4zj25i"))))
+    (properties `((upstream-name . "MultiBaC")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-ggplot2
+           r-matrix
+           r-multiassayexperiment
+           r-pcamethods
+           r-plotrix
+           r-ropls))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/MultiBaC")
+    (synopsis "Multiomic batch effect correction")
+    (description
+     "MultiBaC is a strategy to correct batch effects from multiomic datasets
+distributed across different labs or data acquisition events.  This package is
+the first batch effect correction algorithm that dealing with batch effect
+correction in multiomics datasets.  MultiBaC is able to remove batch effects
+across different omics generated within separate batches provided that at least
+one common omic data type is included in all the batches considered.")
+    (license license:gpl3)))
+
 (define-public r-multtest
   (package
     (name "r-multtest")

base-commit: 7a0a186a32524d4156bf96786d708fab323cebff
-- 
2.39.2

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 63275-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-multibac.
Date: Mon, 08 May 2023 11:15:42 +0200

Applied, thanks!

-- 
Ricardo

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