From debbugs-submit-bounces@debbugs.gnu.org Thu May 04 11:47:04 2023 Received: (at submit) by debbugs.gnu.org; 4 May 2023 15:47:04 +0000 Received: from localhost ([127.0.0.1]:51864 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pubAd-0005RM-Nq for submit@debbugs.gnu.org; Thu, 04 May 2023 11:47:04 -0400 Received: from lists.gnu.org ([209.51.188.17]:57442) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pubAa-0005Qv-CI for submit@debbugs.gnu.org; Thu, 04 May 2023 11:47:02 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pubAY-0006PH-VY for guix-patches@gnu.org; Thu, 04 May 2023 11:47:00 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pubAW-0004kw-Ej for guix-patches@gnu.org; Thu, 04 May 2023 11:46:58 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1683215211; x=1685029612; bh=YIVSIKxL6WTe/jK SA7NANqqVe5tBsKtG1wDQ+rvdajs=; b=BF/aBtpThPi6S0O9hBf4GGB8Ud5BGN7 szpA3EiBa/rDaJlF+kKMJvNK18ojLRcAnjIR2poTRGZp/UEYSe3kmtqc5Itq9j4G bv8jYMOiNoox2hd0zuqqabonIW9woLLApUvxSS7aTa32nMrjtHC+iX8VQtixWclJ kILQOCJmVj4k= Received-SPF: Pass (mailfrom) identity=mailfrom; client-ip=141.80.113.62; helo=sw-it-p-ex4.mdc-berlin.net; envelope-from=madalinionel.patrascu@mdc-berlin.de; receiver= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id C806BA0144 for ; Thu, 4 May 2023 17:46:51 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.219.40) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Thu, 4 May 2023 17:46:50 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-multibac. Date: Thu, 4 May 2023 17:46:40 +0200 Message-ID: <20230504154640.1833-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.219.40] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27606.000 X-TM-AS-Result: No-10--5.110100-5.000000 X-TMASE-MatchedRID: SzbEz7SZt2v/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeMiB3Nk/d/KPw6P KrHYso5vRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v8XjfR3d0weRtdltYPiUG9/2VC 1QWKKKPrHx9G+b0dmxZk8wWeycNvvWi8Qip68NgfdCok3ibXlQeuLFZZYlisfHxPMjOKY7A+6vV BUUydJCsRB0bsfrpPIFT1PBs+MVY3yU/oX+tpNmKPcGEZQINDJO1pUQ2W+bM/TV5lJX9UDufCAf T/kIc3wfjggo0NE7ANr7Pzbdj1ilFXsYqW6483rFUyLa6aHcKDQjO/Rtn2eBfenUZYnV2jTDUEk BTZ8vOLxlyTCXQR4xioA5PA4dQuxuYpJR2kheXd+3BndfXUhXQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.110100-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27606.000 X-TM-SNTS-SMTP: 4B3DE8B313A611D99223C488F415D89B4A1F317EC9DBD0EFE7D04925CF97B5F62002:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioconductor.scm (r-multibac): New variable. --- gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 768b55b25e..299d772bd2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10101,6 +10101,37 @@ (define-public r-mbkmeans large datasets, including support for on-disk data representation.") (license license:expat))) +(define-public r-multibac + (package + (name "r-multibac") + (version "1.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MultiBaC" version)) + (sha256 + (base32 "1qwf1mvw81hb929xpnx5x910f7qnax9lkylhwzcdw1814s4zj25i")))) + (properties `((upstream-name . "MultiBaC"))) + (build-system r-build-system) + (propagated-inputs + (list r-ggplot2 + r-matrix + r-multiassayexperiment + r-pcamethods + r-plotrix + r-ropls)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/MultiBaC") + (synopsis "Multiomic batch effect correction") + (description + "MultiBaC is a strategy to correct batch effects from multiomic datasets +distributed across different labs or data acquisition events. This package is +the first batch effect correction algorithm that dealing with batch effect +correction in multiomics datasets. MultiBaC is able to remove batch effects +across different omics generated within separate batches provided that at least +one common omic data type is included in all the batches considered.") + (license license:gpl3))) + (define-public r-multtest (package (name "r-multtest") base-commit: 7a0a186a32524d4156bf96786d708fab323cebff -- 2.39.2 From debbugs-submit-bounces@debbugs.gnu.org Mon May 08 05:16:01 2023 Received: (at 63275-done) by debbugs.gnu.org; 8 May 2023 09:16:02 +0000 Received: from localhost ([127.0.0.1]:39157 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pvwyP-00033t-I8 for submit@debbugs.gnu.org; Mon, 08 May 2023 05:16:01 -0400 Received: from sender3-of-o57.zoho.com ([136.143.184.57]:21733) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pvwyO-00033l-OT for 63275-done@debbugs.gnu.org; Mon, 08 May 2023 05:16:01 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1683537358; cv=none; d=zohomail.com; s=zohoarc; b=eIn1gm4pFuqFIFlyjgrvlmWF9KD5RlD58TY0Qm0N8DVXj/v+atprygjqvcamJ7uZBE84X/yxoOZmQNYYPJmOQl41vdg8E9JjAqhwhgt3e+1NecM4fwldailKljxFCwLgCIhZnpfGjHeuskH5pLZzHZRFacdp3GxTEOY34jxMm/U= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1683537358; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=ZbQffRgWhO4Os9pqfD2Mcih4p6Zh+XN8BJsY52VAPOVApYnOYbQIq/+EftjXMBYb2tI+sB5iXxtFjR6betva5EoxRrlhA8dOZ6Zj2yzCcPeHi9aVliX3f/LghNGqH1SyfLy3RyOLMnSZIJCEuxyIIZ2r6Qoy7Kaxw+6y8WAJu2Y= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1683537358; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=VG1LAp/EGbsdBwo79AT5alOgM25zAG9b1t+IIDa4dWU=; b=W/+VVEPRgopgnI+lHt5rhoNUiMD/mQ8v9ZJlDjdkexDOt5+8RVfTSnFTSfCVCRw5 d2je7foE+Rd7shPXsOD63UDVQmQsBaiMvcDy6zefBQZfv/Ez9Au28GDmNz2PuvWplN2 jCO2A65HC8GWy2Go8ncb8mBMdOlFSWw4DsXLC46E= Received: from localhost (196-109-142-46.pool.kielnet.net [46.142.109.196]) by mx.zohomail.com with SMTPS id 1683537357424256.93578272288937; Mon, 8 May 2023 02:15:57 -0700 (PDT) User-agent: mu4e 1.10.2; emacs 28.2 From: Ricardo Wurmus To: 63275-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-multibac. Date: Mon, 08 May 2023 11:15:42 +0200 Message-ID: <87zg6fw5dh.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 63275-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! -- Ricardo From unknown Fri Aug 15 17:24:11 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Mon, 05 Jun 2023 11:24:13 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator