From unknown Thu Aug 14 18:38:35 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#63273 <63273@debbugs.gnu.org> To: bug#63273 <63273@debbugs.gnu.org> Subject: Status: guix home / glibc error: libpthread.so.0: undefined symbol Reply-To: bug#63273 <63273@debbugs.gnu.org> Date: Fri, 15 Aug 2025 01:38:35 +0000 retitle 63273 guix home / glibc error: libpthread.so.0: undefined symbol reassign 63273 guix submitter 63273 Blake Shaw severity 63273 normal thanks From debbugs-submit-bounces@debbugs.gnu.org Thu May 04 11:16:08 2023 Received: (at submit) by debbugs.gnu.org; 4 May 2023 15:16:08 +0000 Received: from localhost ([127.0.0.1]:51789 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1puagi-0004UP-Bi for submit@debbugs.gnu.org; Thu, 04 May 2023 11:16:08 -0400 Received: from lists.gnu.org ([209.51.188.17]:47814) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1puagf-0004UE-S3 for submit@debbugs.gnu.org; Thu, 04 May 2023 11:16:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1puagf-0000Kj-KO for bug-guix@gnu.org; Thu, 04 May 2023 11:16:05 -0400 Received: from out-34.mta0.migadu.com ([91.218.175.34]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1puagd-0002YV-0h for bug-guix@gnu.org; Thu, 04 May 2023 11:16:05 -0400 X-Report-Abuse: Please report any abuse attempt to abuse@migadu.com and include these headers. DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=reproduciblemedia.com; s=key1; t=1683213359; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type; bh=K1BnUKARD1cgObqXhBFX/8p7QIkIkraWbPaKxJkr25U=; b=sAqs9AG64Zku5/Lrv3F4yHfCUMrCieVMQA/n241Ew3+KTErWfTkJefi+ekt+LihLDt6aa/ wS6riAA22OKXwTaqmTuh4JpJyJYkqbHnPdeSTc9NworVjySQYUIcX1wZNqg8IvT9UHcHNk ABDTnDHom0R1W/5RMeOn39gYAVMLnPmvilreuYPkM6KoQCSbyH8XM/p/9cPE+NwFKLSIIC PTFJ8yZ9MeUgEa3/IHiqqK+acu0yvzvWygLW+hBHDBNQKDfJokkrbfvGlY3JG6h/0oDoDl zAKawdtHxTFX6SInWR6gluNcGoH5Q7XbSdoY7JL/2C3FrPdrZBrK8Jz5ZDX2CQ== From: Blake Shaw To: bug-guix@gnu.org Subject: guix home / glibc error: libpthread.so.0: undefined symbol Date: Thu, 04 May 2023 22:08:36 +0700 Message-ID: <7z8re4gmaw.fsf@reproduciblemedia.com> MIME-Version: 1.0 Content-Type: text/plain X-Migadu-Flow: FLOW_OUT Received-SPF: pass client-ip=91.218.175.34; envelope-from=blake@reproduciblemedia.com; helo=out-34.mta0.migadu.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) Hi Guix, I just upgraded to the full source bootstrap (my cron job was apparently failing daily due to a channel, and I didn't realize before today), and following the guix pull, I get the following error when running $ guix home reconfiugre "file.scm": ``` /gnu/store/ad8351jvj61da279a3ddfs2gmk3whvdq-guile-wrapper/bin/guile: symbol lookup error: /gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib/libpthread.so.0: undefined symbol: __libc_pthread_init, version GLIBC_PRIVATE ``` Here is my "guix describe": ``` Generation 70 May 04 2023 21:20:10 (current) guix f0a51a2 repository URL: https://git.savannah.gnu.org/git/guix.git branch: master commit: f0a51a2bda26f9cc1e0b54b48712bd7cc54408e9 nonguix 9d58bb6 repository URL: https://gitlab.com/nonguix/nonguix branch: master commit: 9d58bb6e3e93a444d35bf62d4ca98a126ae4f295 rde e5bcfc0 repository URL: https://git.sr.ht/~abcdw/rde branch: master commit: e5bcfc0654bca23aba226a4e8f889ba682525734 ``` Here is my guix system describe, in case its helpful: ``` Generation 201 Apr 09 2023 16:18:54 (current) file name: /var/guix/profiles/system-201-link canonical file name: /gnu/store/44qk4n0v5ig6w9w7896f7kidkpxajswh-system label: GNU with Linux 5.15.106 bootloader: grub-efi root device: /dev/mapper/cryptroot kernel: /gnu/store/9iphrh7l2ys3ddj83xsydnykj0q797w6-linux-5.15.106/bzImage channels: guix: repository URL: https://git.savannah.gnu.org/git/guix.git branch: master commit: b08cdfc6d363e9ca63118303b4628542c54a612d nonguix: repository URL: https://gitlab.com/nonguix/nonguix branch: master commit: 40c48d08cc8c7c82f3212f6695c641cb17ac5d60 rde: repository URL: https://git.sr.ht/~abcdw/rde branch: master commit: 6cc378b905d11c5a393a61aea0809428d7071c5a configuration file: /gnu/store/lm7nd9s9crffs177cfkj1m7asw88z3bj-configuration.scm ``` Rolling back fixes it, as anticipated. 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[174.126.237.169]) by smtp.gmail.com with ESMTPSA id j23-20020aa783d7000000b0063b488f3305sm10509826pfn.155.2023.05.17.07.07.29 for <63273@debbugs.gnu.org> (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 17 May 2023 07:07:30 -0700 (PDT) User-agent: mu4e 1.10.2; emacs 30.0.50 From: Kenny Ballou To: 63273@debbugs.gnu.org Subject: Re: guix home / glibc error: libpthread.so.0: undefined symbol Date: Wed, 17 May 2023 08:02:52 -0600 X-PGP-Key: https://kennyballou.com/932F3E8E1C0F4A9895D7B8B8B0CAA28A02958308.txt Message-ID: <87mt231274.fsf@devnulllabs.io> MIME-Version: 1.0 Content-Type: text/plain X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 63273 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hey Blake, I too was encountering this issue, but I resolved it by restarting the `guix-daemon` process before upgrading the system and again after upgrading the system and before doing a `home` reconfigure. I don't think it's related, but I also cleared out my guix substitute cache before everything worked again. I hope that helps. -Kenny