GNU bug report logs - #63268
[PATCH] gnu: Add python-goatools.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: bug#63268: closed ([PATCH] gnu: Add python-goatools.)
Date: Thu, 04 May 2023 17:24:02 +0000

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Your bug report

#63268: [PATCH] gnu: Add python-goatools.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 63268 <at> debbugs.gnu.org.

-- 
63268: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=63268
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 63268-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add python-goatools.
Date: Thu, 04 May 2023 19:23:10 +0200

Applied with a number of changes.  Thank you!

-- 
Ricardo

[Message part 3 (message/rfc822, inline)]

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add python-goatools.
Date: Thu, 4 May 2023 14:56:49 +0000

* gnu/packages/bioinformatics.scm (python-goatools): New variable.
---
 gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7db8a91e80..db76d04594 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12337,6 +12337,37 @@ (define-public python-genomic-regions
 using the same syntax.")
     (license license:expat)))
 
+(define-public python-goatools
+  (package
+    (name "python-goatools")
+    (version "1.3.1")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "goatools" version))
+              (sha256
+               (base32
+                "1p53h7bnbmi23lcgsajf9vb8vxgjp6lmbz0hl1cx62230jvbfp62"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list #:tests? #f))
+    (propagated-inputs (list python-docopt
+                             python-numpy
+                             python-openpyxl
+                             python-pandas
+                             python-pydot
+                             python-requests
+                             python-scipy
+                             python-statsmodels
+                             python-xlsxwriter))
+    (home-page "https://github.com/tanghaibao/goatools")
+    (synopsis "Python scripts to find enrichment of GO terms")
+    (description "Python scripts to find enrichment of GO terms.
+In addition, this package is used for processing the
+obo-formatted file from Gene Ontology website.  The
+data structure is a directed acyclic graph that allows
+easy traversal from leaf to root.")
+    (license license:bsd-3)))
+
 (define-public python-loompy
   (package
     (name "python-loompy")

base-commit: f0a51a2bda26f9cc1e0b54b48712bd7cc54408e9
-- 
2.34.1

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