From unknown Sun Jun 22 03:49:15 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#63266 <63266@debbugs.gnu.org> To: bug#63266 <63266@debbugs.gnu.org> Subject: Status: [PATCH] gnu: python-screed: Update to 1.1.2. Reply-To: bug#63266 <63266@debbugs.gnu.org> Date: Sun, 22 Jun 2025 10:49:15 +0000 retitle 63266 [PATCH] gnu: python-screed: Update to 1.1.2. reassign 63266 guix-patches submitter 63266 M=C4=83d=C4=83lin Ionel Patra=C8=99cu severity 63266 normal tag 63266 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Thu May 04 10:28:57 2023 Received: (at submit) by debbugs.gnu.org; 4 May 2023 14:28:57 +0000 Received: from localhost ([127.0.0.1]:51668 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1puZx3-0000NQ-6g for submit@debbugs.gnu.org; Thu, 04 May 2023 10:28:57 -0400 Received: from lists.gnu.org ([209.51.188.17]:42610) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1puZx0-0000NH-I2 for submit@debbugs.gnu.org; Thu, 04 May 2023 10:28:55 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1puZwy-000617-O1 for guix-patches@gnu.org; Thu, 04 May 2023 10:28:52 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1puZww-00055S-BY for guix-patches@gnu.org; Thu, 04 May 2023 10:28:52 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1683210508; x=1685024909; bh=yVPkFUUI53eXumj NbT74ELKa4p+e7Xl5qD6XuXQ08hs=; b=paz/4udy1mJ/UyUlUYgQHZkHlKHDdAn q8tF/A04zvgMrUSLzK8vFSJBN6q2pyT+y2AyQgP8F4qZNm8VUDq3QcruXzIR3GLI M4F/BmoCslkiwbBcv8KcpMyGE71qV2FtqOW8HsfdfYZ8BD3DLL18a5SNDJJslecS rCYyzj0AXHLk= Received-SPF: Pass (mailfrom) identity=mailfrom; client-ip=141.80.113.62; helo=sw-it-p-ex4.mdc-berlin.net; envelope-from=madalinionel.patrascu@mdc-berlin.de; receiver= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id B8077A0144 for ; Thu, 4 May 2023 16:28:28 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.219.40) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Thu, 4 May 2023 16:28:28 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: python-screed: Update to 1.1.2. Date: Thu, 4 May 2023 16:28:17 +0200 Message-ID: <20230504142817.25611-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.219.40] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27604.006 X-TM-AS-Result: No-10--5.175200-5.000000 X-TMASE-MatchedRID: 0k28MvzqQ9jhtVvI3rIgyUWtyNepX5gArthpnZXZolDVjNsehGf0vb8F Hrw7frluf146W0iUu2vNs+hSjQLHECq+GZ9ZHxIhuW77/y896siFzNNPDc6umBHfiujuTbedqMB 9ASj7mPNAi7LRj6MEv1G19ehMNpc93PhwfmFb3pjjpxdo/JwVm7+a+v4FF31uD2veI3/hwm/izy 75l6H5qX0tCKdnhB58I/9UW5M5dRNp7qEhmmPgy/cUt5lc1lLgoGRyAacnhabD2R7wX0RYW72oA LfyMqgulVYWLx7H27IJsQz9JHT2XH7cGd19dSFd X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.175200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27604.006 X-TM-SNTS-SMTP: 6C88727FED76E9D08ADB8E0A433761C78FF9C4B88FE368DA0FDD78DD817C1BC02002:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioinformatics.scm (python-screed): Update to 1.1.2. [native-inputs]: Remove the unnecessary dependencies. [inputs]: Remove the section. [build-system]: Change to pyproject. --- gnu/packages/bioinformatics.scm | 12 +++++------- 1 file changed, 5 insertions(+), 7 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 181e68b44b..75ea7b35d6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7628,19 +7628,17 @@ (define-public preseq (define-public python-screed (package (name "python-screed") - (version "1.0") + (version "1.1.2") (source (origin (method url-fetch) (uri (pypi-uri "screed" version)) (sha256 - (base32 - "148vcb7w2wr6a4w6vs2bsxanbqibxfk490zbcbg4m61s8669zdjx")))) - (build-system python-build-system) + (base32 "0slva743xn93h4sl5zg2as4ricnnj5pp6nw9dm4qclk4i9xglkvk")))) + (build-system pyproject-build-system) (native-inputs - (list python-pytest python-pytest-cov python-pytest-runner)) - (inputs - (list python-bz2file)) + (list python-pytest-cov + python-pytest-runner)) (home-page "https://github.com/dib-lab/screed/") (synopsis "Short read sequence database utilities") (description "Screed parses FASTA and FASTQ files and generates databases. base-commit: fa685c87eaa9888a4278f39bb2b815673589dced -- 2.39.2 From debbugs-submit-bounces@debbugs.gnu.org Thu May 04 13:35:11 2023 Received: (at 63266-done) by debbugs.gnu.org; 4 May 2023 17:35:11 +0000 Received: from localhost ([127.0.0.1]:51994 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pucrH-00038L-0n for submit@debbugs.gnu.org; Thu, 04 May 2023 13:35:11 -0400 Received: from sender3-of-o58.zoho.com ([136.143.184.58]:21864) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pucrD-000387-GK for 63266-done@debbugs.gnu.org; Thu, 04 May 2023 13:35:09 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1683221704; cv=none; d=zohomail.com; s=zohoarc; b=liRyUIRroTkfuRuYXB+ibijJ/qGP+2jlTvLAEVp9N5C5oB/YWVISymud18N3NCsBS47iKifp4FeDCUvMQMH4qRnF+FZnHNmBr/1WL2E11QQyENMaZZUanLGH/O7KO6Bwc2oPP68D5czx9lIeh1NX9DVYqIxyc9QZNEWQm5+FyBo= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1683221704; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=R99AXqEQ629Ub99pKhmpX1Tgl1/603+jNLZqQTHdWO7PfnBPNBaHXTAEx5DShoygqpgC97VFq4+kQs2Fr/2A0/4UPQZyjfUe1jfADoOo0Dk0NEyAfvPiEsCcnQ9heAFFjG0puf+Mt1EHpXNXj3+67pH67Lq3rmr+eGLGidKE02c= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1683221704; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=id3TN8Ni6y6JE9TqRs+CbMxkTVq8xYns2XKALA38UAe6l6kt2sSrx7qlgwPB2xrD 3gGkd53JylWq8pFRk9WRaiFOrzoX5Lwg2PjPUksLT0f7JDOy0+pbJB1EI/LbLzEUmR4 nbJBjnIZT15H+wiZrS9yNPv9t8/8UhiqwkfBdLiI= Received: from localhost (6-108-142-46.pool.kielnet.net [46.142.108.6]) by mx.zohomail.com with SMTPS id 1683221703656535.590861175606; Thu, 4 May 2023 10:35:03 -0700 (PDT) User-agent: mu4e 1.10.2; emacs 28.2 From: Ricardo Wurmus To: 63266-done@debbugs.gnu.org Subject: [PATCH] gnu: python-screed: Update to 1.1.2. 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