From unknown Sun Jun 22 04:32:31 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#63000] [PATCH] gnu: python-rseqc: Update to 5.0.1. 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Fri, 21 Apr 2023 17:13:59 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Fri, 21 Apr 2023 17:13:59 +0200 From: Navid Afkhami Date: Fri, 21 Apr 2023 15:13:43 +0000 Message-ID: <20230421151343.49386-1-navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27580.000 X-TM-AS-Result: No-10-2.071000-5.000000 X-TMASE-MatchedRID: XkNV3gME5wsB90FcL1q4MBF4zyLyne+ATJDl9FKHbrlCWeTA3eP5FLph j8rLEzG1iAlQZ2ElSwVoE+yMQ19+VNJbXmVoVA6OGqSG/c50XgMLHkFXE0ZxdpcFdomgH0lnFEU knJ/kEl6YwzE9E8g5OfoLR4+zsDTttrrTuahHzlHBMYv4nmlileTQKocuqASd7GJfqFGDb5Qxqi +OHaBRUwzGnT1CDHjxIC7K3/bERgC62dCp1KT3vPR+fOaXJ8//x57pwFTs+NZvx+y4SCozttG1p fB9ENkTtDC+Oypvl/RGDgEFwm6aoD6Qrn3xh/cy X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-2.071000-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27580.000 X-TM-SNTS-SMTP: 6CA8C4B30E10460F4676275649072CEDFF687F7D052EDF87C30CA7E5678F5B202002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioinformatics.scm (python-rseqc): Update to 5.0.1. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index eeee820e84..bcef6a593c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3099,8 +3099,8 @@ (define-public python-rseqc (propagated-inputs (list python-bx-python python-numpy python-pybigwig python-pysam)) (native-inputs (list python-cython python-nose)) - (home-page "https://github.com/MonashBioinformaticsPlatform/RSeQC") - (synopsis "RNA-seq quality control packag") + (home-page "https://rseqc.sourceforge.net") + (synopsis "RNA-seq quality control package") (description "Useful modules that can comprehensively evaluate high throughput sequence data. Some basic modules quickly inspect sequence, quality, nucleotide composition bias, -- 2.34.1 From unknown Sun Jun 22 04:32:31 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Navid Afkhami Subject: bug#63000: closed ([PATCH] gnu: python-rseqc: Update to 5.0.1.) Message-ID: References: <87h6fbjitt.fsf@elephly.net> <20230421151343.49386-1-navid.afkhami@mdc-berlin.de> X-Gnu-PR-Message: they-closed 63000 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 63000@debbugs.gnu.org Date: Mon, 06 May 2024 11:13:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1714993982-31957-1" This is a multi-part message in MIME format... ------------=_1714993982-31957-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #63000: [PATCH] gnu: python-rseqc: Update to 5.0.1. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 63000@debbugs.gnu.org. --=20 63000: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D63000 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1714993982-31957-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 63000-done) by debbugs.gnu.org; 6 May 2024 11:12:17 +0000 Received: from localhost ([127.0.0.1]:37347 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s3wGX-0008JA-7A for submit@debbugs.gnu.org; Mon, 06 May 2024 07:12:17 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21117) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s3wGU-0008J4-Lt for 63000-done@debbugs.gnu.org; Mon, 06 May 2024 07:12:16 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1714993907; cv=none; d=zohomail.com; s=zohoarc; b=NHzOHOktg/oFNAwzY6yidu8Pjg9t+yLJ0ICD1pp+yjTCLl0fpQDUUF8XGDZn+DKIYe1gVh7ZFlD/A1hhQRyLaU9MPQDb1oS921DUYZUYmh0buIbqOupTf7ImBXOx6ZkA5ojRw69pcq23N12naxl4E39vmJ5qEL8bvoWCtz3hZRE= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1714993907; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=xk4e9vHaDMa2L06pl5Ltg1JwU1GdFov7hIzYr4/3rCc=; b=BYFfZZjzbOIeAKLDKop5TsxAhFz8zQareVJIFDmUdsPhm7O0b7oisAROjcbctTU30Wpr0pseN+cQ4ol5ph+qTK/k5agTWayIrnpcgHWtWz0LEC4FmwmMqnIKg5ZXKGoj2txtvGdKiHrVEPpisZgrs9VdbQDmKzbnZS+D5eiHs7U= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1714993907; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=xk4e9vHaDMa2L06pl5Ltg1JwU1GdFov7hIzYr4/3rCc=; b=S5N1UGLaKnBjOhOGEjscVj+Almh33pF3Tg58ocfJ6ri8NZRwfQnbqfdXdK6BK9Oz CI6pIogB75hyIhsZGOWMf6pWXK7bX2WVrL1RnDw5fN/7Fwn7chKWwAqn7CKIaASE+ky zYql1YKsGQ6nhP26dgbRDME3G8wzEwKmio9YWFD0= Received: by mx.zohomail.com with SMTPS id 1714993905735329.5199022666475; Mon, 6 May 2024 04:11:45 -0700 (PDT) From: Ricardo Wurmus To: 63000-done@debbugs.gnu.org Subject: [PATCH] gnu: python-rseqc: Update to 5.0.1. User-Agent: mu4e 1.12.4; emacs 29.3 Date: Mon, 06 May 2024 13:11:42 +0200 Message-ID: <87h6fbjitt.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 63000-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) I'm closing this because the patch contents and the commit message don't agree. -- Ricardo ------------=_1714993982-31957-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 21 Apr 2023 15:14:09 +0000 Received: from localhost ([127.0.0.1]:40953 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ppsSf-0003OL-DA for submit@debbugs.gnu.org; Fri, 21 Apr 2023 11:14:09 -0400 Received: from lists.gnu.org ([209.51.188.17]:59472) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ppsSd-0003OC-9x for submit@debbugs.gnu.org; Fri, 21 Apr 2023 11:14:08 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ppsSc-0005Gm-26 for guix-patches@gnu.org; Fri, 21 Apr 2023 11:14:06 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ppsSa-0002lZ-3z for guix-patches@gnu.org; Fri, 21 Apr 2023 11:14:05 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1682090040; x=1683904441; bh=CUPK+3iWOKbELaH Fjnb6YEHL0gTU5xDCz4tpqzBbcDY=; b=pp60Z8Klqri8agJNcDcyJWkin56cG4I ISzzzBfnRxqhd5G2ZsaqPhuhiHrnd9hYSF3ntQNoZFKe5seQ8dK5hE16ZXzLxJV+ NUsutKddXjg9kW8FX7+JdDlQQJcm4Os7qQehXDsNbqvdj05Idlaon9/96109YHFm Bhyzb6cTeYdo= Received-SPF: Pass (mailfrom) identity=mailfrom; client-ip=141.80.113.62; helo=sw-it-p-ex4.mdc-berlin.net; envelope-from=navid.afkhami@mdc-berlin.de; receiver= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 05C08160153 for ; Fri, 21 Apr 2023 17:13:59 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Fri, 21 Apr 2023 17:13:59 +0200 From: Navid Afkhami To: Subject: [PATCH] gnu: python-rseqc: Update to 5.0.1. 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Some basic modules quickly inspect sequence, quality, nucleotide composition bias, -- 2.34.1 ------------=_1714993982-31957-1--