GNU bug report logs - #62882
[PATCH] gnu: Add r-demultiplex2.

Previous Next

Full log

View this message in rfc822 format

From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#62882: closed ([PATCH] gnu: Add r-demultiplex2.)
Date: Mon, 17 Apr 2023 09:21:02 +0000

[Message part 1 (text/plain, inline)]

Your message dated Mon, 17 Apr 2023 11:20:11 +0200
with message-id <87a5z6sw4h.fsf <at> elephly.net>
and subject line gnu: Add r-demultiplex2.
has caused the debbugs.gnu.org bug report #62882,
regarding [PATCH] gnu: Add r-demultiplex2.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
62882: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=62882
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-demultiplex2.
Date: Sun, 16 Apr 2023 12:28:12 +0200

* gnu/packages/bioinformatics.scm (r-demultiplex2): New variable.
---
 gnu/packages/bioinformatics.scm | 41 +++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b5442dd0ad..1919866731 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9662,6 +9662,47 @@ (define-public r-demuxmix
 rates can be estimated, and methods for quality control are provided.")
       (license license:artistic2.0))))
 
+(define-public r-demultiplex2
+  (let ((commit "e42bc8310c0ea035af100e6ccea59b46ad6385f5")
+        (revision "1"))
+    (package
+      (name "r-demultiplex2")
+      (version (git-version "1.0.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/Gartner-Lab/deMULTIplex2")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "15f3kshsdvm97w24ql9b1wjlfbabimdsam0482hg7jivlvpl8j9w"))))
+      (properties `((upstream-name . "deMULTIplex2")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-data-table
+                               r-devtools
+                               r-dplyr
+                               r-ggextra
+                               r-ggplot2
+                               r-gridextra
+                               r-magrittr
+                               r-mass
+                               r-matrix
+                               r-rcolorbrewer
+                               r-shortread
+                               r-stringdist
+                               r-tidyr
+                               r-uwot
+                               r-viridis
+                               r-xvector))
+      (home-page "https://github.com/Gartner-Lab/deMULTIplex2")
+      (synopsis "Robust sample demultiplexing for scRNA-seq")
+      (description
+       "Bioinformatics algorithm for demultiplexing multiplexed single cell datasets.
+It is built on a statistical model of tag read counts derived from
+the physical mechanism of tag cross-contamination.")
+      (license license:cc0))))
+
 (define-public r-demultiplex
   (let ((commit "6e2a1422c8e6f418cfb271997eebc91f9195f299")
         (revision "1"))
-- 
2.34.1

[Message part 3 (message/rfc822, inline)]

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 62882-done <at> debbugs.gnu.org
Subject: gnu: Add r-demultiplex2.
Date: Mon, 17 Apr 2023 11:20:11 +0200

Applied, thanks!

-- 
Ricardo

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.