GNU bug report logs - #62881
[PATCH] gnu: Add r-demuxmix.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#62881: closed ([PATCH] gnu: Add r-demuxmix.)
Date: Mon, 17 Apr 2023 09:21:01 +0000

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Your message dated Mon, 17 Apr 2023 11:19:34 +0200
with message-id <87edoisw5d.fsf <at> elephly.net>
and subject line gnu: Add r-demuxmix.
has caused the debbugs.gnu.org bug report #62881,
regarding [PATCH] gnu: Add r-demuxmix.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
62881: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=62881
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-demuxmix.
Date: Sun, 16 Apr 2023 12:09:48 +0200

* gnu/packages/bioinformatics.scm (r-demuxmix): New variable.
---
 gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 99cc056f9f..b5442dd0ad 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9632,6 +9632,36 @@ (define-public r-centipede
 information as possible.")
     (license (list license:gpl2+ license:gpl3+))))
 
+(define-public r-demuxmix
+  (let ((commit "09a7918ca6e0cd23e6bbaed2b97388bc499e248e")
+        (revision "1"))
+    (package
+      (name "r-demuxmix")
+      (version (git-version "1.1.1" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/huklein/demuxmix")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "03kfnns7m2447jsc3xplyv9qx8hvvdjmii7j837g3bb6smyxss96"))))
+      (properties `((upstream-name . "demuxmix")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-ggplot2 r-gridextra r-mass r-matrix))
+      (native-inputs (list r-knitr))
+      (home-page "https://github.com/huklein/demuxmix")
+      (synopsis
+       "Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models")
+      (description
+       "This package is used for demultiplexing single-cell sequencing experiments of pooled cells.
+These cells are labeled with barcode oligonucleotides.  The package
+implements methods to fit regression mixture models for a probabilistic
+classification of cells, including multiplet detection.  Demultiplexing error
+rates can be estimated, and methods for quality control are provided.")
+      (license license:artistic2.0))))
+
 (define-public r-demultiplex
   (let ((commit "6e2a1422c8e6f418cfb271997eebc91f9195f299")
         (revision "1"))
-- 
2.34.1

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 62881-done <at> debbugs.gnu.org
Subject: gnu: Add r-demuxmix.
Date: Mon, 17 Apr 2023 11:19:34 +0200

Applied, thank you!

-- 
Ricardo

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