From unknown Tue Jun 17 20:18:38 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#62441 <62441@debbugs.gnu.org> To: bug#62441 <62441@debbugs.gnu.org> Subject: Status: [patch] gnu: Add r-ctrialsgov, r-jsonify, r-nodbi, r-ctrdata. Reply-To: bug#62441 <62441@debbugs.gnu.org> Date: Wed, 18 Jun 2025 03:18:38 +0000 retitle 62441 [patch] gnu: Add r-ctrialsgov, r-jsonify, r-nodbi, r-ctrdata. reassign 62441 guix-patches submitter 62441 M=C4=83d=C4=83lin Ionel Patra=C8=99cu severity 62441 normal tag 62441 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Sat Mar 25 08:50:38 2023 Received: (at submit) by debbugs.gnu.org; 25 Mar 2023 12:50:38 +0000 Received: from localhost ([127.0.0.1]:42106 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg3Lx-0005fD-VV for submit@debbugs.gnu.org; Sat, 25 Mar 2023 08:50:38 -0400 Received: from lists.gnu.org ([209.51.188.17]:35512) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg3Lw-0005f4-61 for submit@debbugs.gnu.org; Sat, 25 Mar 2023 08:50:36 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pg3Ld-0003l5-Ao for guix-patches@gnu.org; Sat, 25 Mar 2023 08:50:20 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pg3LY-0002LI-9N for guix-patches@gnu.org; Sat, 25 Mar 2023 08:50:14 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-transfer-encoding:content-type:content-type:subject :subject:from:from:content-language:user-agent:mime-version:date :date:message-id:received; s=mdc; t=1679739874; x=1681554275; bh=Y2q8meX/6kA5BfOb98vcVCKiDWucHxu+cyFvj+e0ghE=; b=I2oziPMTxgrY sCBEOlvSekcbmymJMKdS2SyJZsKStC5NgQTUkj/9iSRBzPcBaD5HyoVkOiAyJcyW 0irTcopckAFGYqFKaNoXk1ww2oaTjHig2AG1NcZj1H5hdKkRLx+vn98F5gf67u6Y SkDEP/JK0zUkkzexO6RMulIVJ9MxU38= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 16E8DA0184 for ; Sat, 25 Mar 2023 11:24:24 +0100 (CET) Received: from [192.168.1.220] (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 11:24:23 +0100 Message-ID: <968dbc69-60f7-1d7d-a2f2-9e5b2e2deea1@mdc-berlin.de> Date: Sat, 25 Mar 2023 11:24:22 +0100 MIME-Version: 1.0 User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:102.0) Gecko/20100101 Thunderbird/102.8.0 Content-Language: en-US, ro-RO To: From: =?UTF-8?B?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= Subject: [patch] gnu: Add r-ctrialsgov, r-jsonify, r-nodbi, r-ctrdata. 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From debbugs-submit-bounces@debbugs.gnu.org Sat Mar 25 13:46:34 2023 Received: (at 62441) by debbugs.gnu.org; 25 Mar 2023 17:46:34 +0000 Received: from localhost ([127.0.0.1]:43412 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yM-00086R-8V for submit@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:34 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:58607) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yJ-00085t-Vl for 62441@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:32 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679766385; x=1681580786; bh=WO4kw8qrhmmBu3nYABuRIWY3EnTJvOFeSyE/BLJgUFk=; b=M9TjCSGPyCal ov+mLYtGsJ7mMrKN58Yuk1o0VZOGhaBeZknfg9j4IUzzE55Ybyu/sJrmYFugrIfW 2b7sBs3KIgP42XEEtK3P+0SP2Hv/Nhcc3wK+xQtyCX2e2sFz4uyCZ5gbYFVs+T8G 6Yswh9oi3wBDRZWc7g/oj5GtL7EC5x4= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 584CC16013D for <62441@debbugs.gnu.org>; Sat, 25 Mar 2023 18:46:25 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 18:46:20 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <62441@debbugs.gnu.org> Subject: [PATCH 3/4] gnu: Add r-nodbi. Date: Sat, 25 Mar 2023 18:45:54 +0100 Message-ID: <20230325174555.837323-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> References: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-AS-Result: No-10--1.218400-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEIjG wx10ej9iRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v8XjfR3d0weRkYUijfAB7a8HnC x8pl2QgPF+KCpGE37CJsoi2XrUn/J8m+hzBStantdY+ZoWiLIm8K21zBg2KlfvG0VHndRxgK7Xz KmET21JVlmSDxgemot8Se9nsXMOZNid6+d1Mql0QnY0KdMvY12bgEcGa+zYvj0bIt8L7gTDLeIe vCibKdLs8+hzf3O9mUoQg4MrLBPLqN8mCVfMdDqzFFXNLNe3bF/6uEw9r+ytQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.218400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-SNTS-SMTP: 82B40C74893E83B75E25C6EEA3B067CA8FDCE429F8C838FD736C47E0FA01F5ED2002:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 62441 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-nodbi): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 034dd0869a..9b314bae43 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12275,6 +12275,33 @@ (define-public r-sjmisc tidyverse workflow.") (license license:gpl3))) +(define-public r-nodbi + (package + (name "r-nodbi") + (version "0.9.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "nodbi" version)) + (sha256 + (base32 "1hn0wy2ry9l3wwqrshmf82cxigkm16wycwprv458bcvb5k6ayy5m")))) + (properties `((upstream-name . "nodbi"))) + (build-system r-build-system) + (propagated-inputs + (list r-dbi + r-jqr + r-jsonify + r-jsonlite + r-stringi + r-uuid)) + (home-page "https://docs.ropensci.org/nodbi/") + (synopsis "NoSQL database connector") + (description + "The nodbi package aims to simplified document database access and +manipulation, by providing a common API across supported NoSQL databases +Elasticsearch, CouchDB, MongoDB as well as SQLite/JSON1, PostgreSQL, and DuckDB.") + (license license:expat))) + (define-public r-nortest (package (name "r-nortest") -- 2.39.2 From debbugs-submit-bounces@debbugs.gnu.org Sat Mar 25 13:46:35 2023 Received: (at 62441) by debbugs.gnu.org; 25 Mar 2023 17:46:35 +0000 Received: from localhost ([127.0.0.1]:43414 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yM-00086T-J2 for submit@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:34 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:37225) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yJ-00085v-W6 for 62441@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:33 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1679766385; x=1681580786; bh=z+2pVVbkTOsecXe SthtCODbPNu9Eh76iMSroX/+vGwE=; b=nCsSebPQSTta2dE/33T/97C/Bd92Wi3 UVYGFDrmN+Gycv9EVt2dXJA16EdoOZN+qwiOxTHqxQQ4iPvE7zgxcQcsB8V/DIUl ZPYN0ksNySTOBF8aASmRrHq0jF5ziVGMzwLSYSS3uG82E2gSHgM8zkrhpiMl0MyR eOTOhPfOGv5o= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id D274C160146 for <62441@debbugs.gnu.org>; Sat, 25 Mar 2023 18:46:25 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 18:46:20 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <62441@debbugs.gnu.org> Subject: [PATCH 1/4] gnu: Add r-ctrialsgov. Date: Sat, 25 Mar 2023 18:45:52 +0100 Message-ID: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-AS-Result: No-10-3.720200-5.000000 X-TMASE-MatchedRID: cSoPLjBYd53/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEPVS VC7uYV8ESQyRa2QqiAppuUdAUcH4tSq+GZ9ZHxIhuW77/y896siFzNNPDc6umBHfiujuTbedW81 XJ6ySHxuh3Yuds1eHGzjNjyLdNN9rOK1YuUtHUz0GTYh4hC/Pnz7BhvpELLyoPQJysmL0UdP0JZ Q6Idg+snNSxh3pgBdGT+FAF+0qgOBaLxCKnrw2B90KiTeJteVBPn/9u4K/no6XBXaJoB9JZxRFJ Jyf5BJe3QfwsVk0Ubt2gyyw2xTBhcpFrnx+AnsCz/47lNYtiIdQ7zJ94zRCZiQbetkNUe3us20G sdpM4dHklfsSU3WAA/SoV1oYitNeW6SjnZ/N1gbyvhj+CjrKLsel4d1cuMtvjvdbOxcC5/MQtmu xiADqhvKHck16UKN1GR8AXHcOfjI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-3.720200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-SNTS-SMTP: CED20F328DCBD0E8CD17B1148618C39D3435BA7AA806D6506718C78F34BD33FE2002:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 62441 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-ctrialsgov): New variable. --- gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a36c845479..a3590fe9cd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -396,6 +396,43 @@ (define-public r-cplm comparison tool involving zero-inflated and highly skewed distributions.") (license license:gpl2+))) +(define-public r-ctrialsgov + (package + (name "r-ctrialsgov") + (version "0.2.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "ctrialsgov" version)) + (sha256 + (base32 "0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw")))) + (properties `((upstream-name . "ctrialsgov"))) + (build-system r-build-system) + (propagated-inputs + (list r-dbi + r-dplyr + r-ggplot2 + r-htmlwidgets + r-lubridate + r-matrix + r-plotly + r-purrr + r-rlang + r-stringi + r-tibble)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=ctrialsgov") + (synopsis + "Query data from U.S. National Library of Medicine's Clinical trials database") + (description + "The ctrialsgov package implements a series of tools which create and query +database from the United States National Library of Medicine's Clinical trials +database @url{https://clinicaltrials.gov/}. Functions provide access a variety +of techniques for searching the data using range queries, categorical filtering, +and by searching for full-text keywords. Minimal graphical tools are also +provided for interactively exploring the constructed data.") + (license license:expat))) + (define-public r-curry (package (name "r-curry") base-commit: de84b24613afa4020f3f0553dad8e39a78d1f92c -- 2.39.2 From debbugs-submit-bounces@debbugs.gnu.org Sat Mar 25 13:46:35 2023 Received: (at 62441) by debbugs.gnu.org; 25 Mar 2023 17:46:35 +0000 Received: from localhost ([127.0.0.1]:43416 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yM-00086a-Ux for submit@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:35 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:39143) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yJ-00085s-Vn for 62441@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:33 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679766382; x=1681580783; bh=X+8he4ec1WoDn7/L6jFwUYXXUhWrXEDQRNBgQqxY+QE=; b=EbY83cA+aqOZ Nhhdwm3bTbQZxMuAbQ3yb5z/5+DMYOMYUL2v0hHPLKULoodK7Zhe66vE2iCCt6Wx xIO3CYQskf7LQfAqEnqbGHc8WJpQNp8nf9JIs9d+4r34JREKqKFiYwLD7dUsMWIJ Y2OS7WeTZY33yEbCh53GEm9S63Lg/jU= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 8A908160123 for <62441@debbugs.gnu.org>; Sat, 25 Mar 2023 18:46:21 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 18:46:20 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <62441@debbugs.gnu.org> Subject: [PATCH 2/4] gnu: Add r-jsonify. Date: Sat, 25 Mar 2023 18:45:53 +0100 Message-ID: <20230325174555.837323-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> References: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-AS-Result: No-10--0.522400-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkECYq 7+inhWQ/EyNJQfCPniLuNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5r4qCLIu0mtIP+aPQT1cxlGfEz RZ8UqjkrF+KCpGE37CJsoi2XrUn/J8m+hzBStantdY+ZoWiLIm8K21zBg2KlfiN2nYwbbDKyqmq Wbyu6hYl+pP1lZq/N/sa3iCh86emcfJz8enx6YV+U6slhm+UN3KK8f6gmnPYeGoA9d9F8KQmbQI itoEZFKOcI1HktvuUooQg4MrLBPLqN8mCVfMdDqzFFXNLNe3bF/6uEw9r+ytQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.522400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-SNTS-SMTP: 5F20A190C341346591CBC3DE369B9545A4A5F915305176964DB73B7AD2BE2B1D2002:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 62441 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-jsonify): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a3590fe9cd..034dd0869a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3309,6 +3309,27 @@ (define-public r-jsonlite in systems and applications.") (license license:expat))) +(define-public r-jsonify + (package + (name "r-jsonify") + (version "1.2.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "jsonify" version)) + (sha256 + (base32 "0bxgyj5b1hnijq5315g050giixy4k5mjz2zdx8yil0igb5ifji9p")))) + (properties `((upstream-name . "jsonify"))) + (build-system r-build-system) + (propagated-inputs (list r-rapidjsonr r-rcpp)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=jsonify") + (synopsis "Convert between R objects and Javascript object notation (JSON)") + (description + "The jsonify package helps with the conversions between R objects and +@acronym{JSON, Javascript Object Notation} using the rapidjsonr library.") + (license license:expat))) + (define-public r-servr (package (name "r-servr") -- 2.39.2 From debbugs-submit-bounces@debbugs.gnu.org Sat Mar 25 13:46:44 2023 Received: (at 62441) by debbugs.gnu.org; 25 Mar 2023 17:46:44 +0000 Received: from localhost ([127.0.0.1]:43418 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yW-00086z-9m for submit@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:44 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:59757) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pg7yK-00085w-HV for 62441@debbugs.gnu.org; Sat, 25 Mar 2023 13:46:33 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679766386; x=1681580787; bh=lKxij0GKexrq5jyvTIGWeispF7hGWuEkJgEAzGd2WOk=; b=BoncWdrbkmtp BL6+OJQrvmCZ3GOuhGIIqLQvGq0klDCLbV2F4NbM0PzgpTlnZTN5jXqgRBnG1CfW wk580k35R0+yOb/0dtWYv0MEMnXxwfZ6JXWItq0ItdKCfR1m/8m9IEke0k5Yd+wb /LbMHfhZZNd2YFIssPNi92M/c9sKJIA= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 9BB3C16014E for <62441@debbugs.gnu.org>; Sat, 25 Mar 2023 18:46:26 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 18:46:21 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <62441@debbugs.gnu.org> Subject: [PATCH 4/4] gnu: Add r-ctrdata. Date: Sat, 25 Mar 2023 18:45:55 +0100 Message-ID: <20230325174555.837323-4-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> References: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-AS-Result: No-10-3.500300-5.000000 X-TMASE-MatchedRID: ZAkTtSyZ7B7/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEPVS VC7uYV8ESQyRa2QqiAppuUdAUcH4tSq+GZ9ZHxIhuW77/y896siFzNNPDc6umBHfiujuTbedBO6 2kWcWGBhu4z/YYEdR45bpyCR4N2Viq2NInS93zS9oMLOoNHsM9rLZpUHs8KMVpz4V9BzQ0RpwuO Ip1++GNwWy+slqkucq38BVk5/okjyLBhscdVmCC4FhphRl/QgVN5dqZcIK7VgCHZkKE/8Uqp6ba /D5x6cp4vM1YF6AJbbY2hczJbMEQgtuKBGekqUpOlxBO2IcOBYFPVJaadF6GoKXCgPaz4KMCxLZ 5MCYylxqJ3jSe0KrrSQTUdsZa70Jjxkh99Y595kohu0bpV5Ex0MP4oSvXW48/gL0Zxhzykd+3Bn dfXUhXQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-3.500300-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27526.001 X-TM-SNTS-SMTP: 3A90914720C714FACA7E7756E67FA6AB47DD8D5AC4456D49C027E0B764512CCD2002:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 62441 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-ctrdata): New variable. --- gnu/packages/cran.scm | 46 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 46 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9b314bae43..6e70dd134a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -97,6 +97,7 @@ (define-module (gnu packages cran) #:use-module (gnu packages pcre) #:use-module (gnu packages pdf) #:use-module (gnu packages perl) + #:use-module (gnu packages php) #:use-module (gnu packages pkg-config) #:use-module (gnu packages pulseaudio) ;libsndfile #:use-module (gnu packages protobuf) @@ -396,6 +397,51 @@ (define-public r-cplm comparison tool involving zero-inflated and highly skewed distributions.") (license license:gpl2+))) +(define-public r-ctrdata + (package + (name "r-ctrdata") + (version "1.11.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ctrdata" version)) + (sha256 + (base32 "076v3bll8s6m61wcbwgrgrm34g0wa7gsc90mbwxwap1xfxyzjjsg")))) + (properties `((upstream-name . "ctrdata"))) + (build-system r-build-system) + (inputs + (list coreutils + perl + php + sed)) + (propagated-inputs + (list r-clipr + r-curl + r-dplyr + r-httr + r-jsonlite + r-lubridate + r-nodbi + r-rvest + r-stringi + r-xml2)) + (native-inputs (list r-r-rsp)) + (home-page "https://cran.r-project.org/package=ctrdata") + (synopsis "Retrieve and analyze clinical trials in public registers") + (description + "This package provides a system for querying, retrieving and analyzing +protocol- and results-related information on clinical trials from three public +registers, the @acronym{EUCTR, European Union Clinical Trials Register} @url{ +https://www.clinicaltrialsregister.eu/}, @acronym{CTGOV, ClinicalTrials.gov} +@url{https://clinicaltrials.gov/} and the @acronym{ISRCTN, International Clinical +Trials Registry Platform} @url{https://www.isrctn.com/}. Trial information is +downloaded, converted and stored in a database. Functions are included to +identify deduplicated records, to easily find and extract variables (fields) of +interest even from complex nesting as used by the registers, and to update +previous queries. The package can be used for meta-analysis and trend-analysis +of the design and conduct as well as for results of clinical trials.") + (license license:expat))) + (define-public r-ctrialsgov (package (name "r-ctrialsgov") -- 2.39.2 From debbugs-submit-bounces@debbugs.gnu.org Sun Mar 26 13:02:26 2023 Received: (at 62441-done) by debbugs.gnu.org; 26 Mar 2023 17:02:26 +0000 Received: from localhost ([127.0.0.1]:45742 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pgTlC-0000hl-3k for submit@debbugs.gnu.org; Sun, 26 Mar 2023 13:02:26 -0400 Received: from sender3-of-o57.zoho.com ([136.143.184.57]:21715) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pgTlA-0000hd-6j for 62441-done@debbugs.gnu.org; Sun, 26 Mar 2023 13:02:24 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1679850141; cv=none; d=zohomail.com; s=zohoarc; b=A8anrPB7iveZp/OBCBZSc6cD24mAeTU2Z87ClmgL34vfEEinE3kf8krunJOWD/H7EvdTE32sJe2mQFb7X+ftP+3XBI4oB2ZSj0NKxERfnXuS2Yr8HV9ml96LMh18cAlDOdwErmMTOfGgO05jpsO/HW9VFcop0h4Ze5UTL4OIZsM= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1679850141; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=oCdEOBiii3ea0dqACZVCiwj1lvyfGeN9aGN5Rp0dxeQ=; b=b2f/ts0c2n8RuYtVNfPEGUiFdZVygU5vKvQ9UD/a1TBdSWQHnBN91Kfk68PoQ2tbqzsHMeOXF7SMpectCbFcsFGUH86scDPk069F5Px8hUJFOKJPmeQawaTijNLOJ2UEfu7gBXJmklNxqNV5VmPcqBoSaKJF6xc1BEVUJtmVl84= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1679850141; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=oCdEOBiii3ea0dqACZVCiwj1lvyfGeN9aGN5Rp0dxeQ=; b=CQLt+TpTqDzLxeVmuC7MOGSuD8T9qPzqZg5tClpKF1eCKGk1FhWl/W/kDLj7Jj5b fwQG87wWzoa9WLlLxfylt7ysKM0Z5bVevhFwE7jl2dIprL55LBReI+XxG7ZV8gMc8vS x3rVX4hPDQvqGLjCtQ0Waz0Su2Fchq8gBdJCYtQk= Received: from localhost (211-108-142-46.pool.kielnet.net [46.142.108.211]) by mx.zohomail.com with SMTPS id 167985013950838.312579220552834; Sun, 26 Mar 2023 10:02:19 -0700 (PDT) References: <968dbc69-60f7-1d7d-a2f2-9e5b2e2deea1@mdc-berlin.de> <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.8.13; emacs 28.2 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#62441] [PATCH 1/4] gnu: Add r-ctrialsgov. Date: Sun, 26 Mar 2023 19:01:42 +0200 In-reply-to: <20230325174555.837323-1-madalinionel.patrascu@mdc-berlin.de> Message-ID: <875yanh2ef.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 62441-done Cc: 62441-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/cran.scm (r-ctrialsgov): New variable. We worked on the same patches at the same time. I pushed this series yesterday. Thanks! --=20 Ricardo From unknown Tue Jun 17 20:18:38 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Mon, 24 Apr 2023 11:24:08 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator