GNU bug report logs - #62428
gnu: Add r-anota2seq, r-hybridmtest, r-apalyzer, r-org-sc-sgd-db, r-apcomplex, r-mdqc, , r-parody, r-arraymvout, r-arrayquality, r-beaddatapackr, r-beadarray, r-arrayqualitymetrics, r-repmis, r-setrng..

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <62428 <at> debbugs.gnu.org.>
Subject: [bug#62428] [PATCH 14/14] gnu: Add r-arrayqualitymetrics.
Date: Sat, 25 Mar 2023 00:19:00 +0100

* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): New variable.
---
 gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6c114efd21..8792c94d29 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3190,6 +3190,44 @@ (define-public r-antiprofiles
 tumor samples from healthy controls.")
     (license license:artistic2.0)))
 
+(define-public r-arrayqualitymetrics
+  (package
+    (name "r-arrayqualitymetrics")
+    (version "3.54.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "arrayQualityMetrics" version))
+       (sha256
+        (base32 "0jz9b3f8x1aal4sskq1a09jpavhm8alggwbj3ka42fb89xymrz33"))))
+    (properties `((upstream-name . "arrayQualityMetrics")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-affy
+           r-affyplm
+           r-beadarray
+           r-biobase
+           r-genefilter
+           r-gridsvg
+           r-hmisc
+           r-hwriter
+           r-lattice
+           r-latticeextra
+           r-limma
+           r-rcolorbrewer
+           r-setrng
+           r-svglite
+           r-vsn
+           r-xml))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/arrayQualityMetrics")
+    (synopsis "Quality metrics report for microarray data sets")
+    (description
+     "This package generates microarray quality metrics reports for data in
+Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch).
+One and two color array platforms are supported.")
+    (license license:lgpl2.0+)))
+
 (define-public r-arrayexpress
   (package
     (name "r-arrayexpress")
-- 
2.39.2

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