GNU bug report logs - #62428
gnu: Add r-anota2seq, r-hybridmtest, r-apalyzer, r-org-sc-sgd-db, r-apcomplex, r-mdqc, , r-parody, r-arraymvout, r-arrayquality, r-beaddatapackr, r-beadarray, r-arrayqualitymetrics, r-repmis, r-setrng..

Previous Next

Full log

View this message in rfc822 format

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <62428 <at> debbugs.gnu.org.>
Subject: [bug#62428] [PATCH 13/14] gnu: Add r-beadarray.
Date: Sat, 25 Mar 2023 00:18:59 +0100

* gnu/packages/bioconductor.scm (r-beadarray): New variable.
---
 gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e7ab9c983c..6c114efd21 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -17943,6 +17943,40 @@ (define-public r-beachmat
 matrices.")
     (license license:gpl3)))
 
+(define-public r-beadarray
+  (package
+    (name "r-beadarray")
+    (version "2.48.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "beadarray" version))
+       (sha256
+        (base32 "0fr24gj6h2rr1r4l3n8myjaihjqi5yinwdsxqa5ih8m3v72dlrby"))))
+    (properties `((upstream-name . "beadarray")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-annotationdbi
+           r-beaddatapackr
+           r-biobase
+           r-biocgenerics
+           r-genomicranges
+           r-ggplot2
+           r-hexbin
+           r-illuminaio
+           r-iranges
+           r-limma
+           r-reshape2))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/beadarray")
+    (synopsis
+     "Quality assessment and low-level analysis for Illumina BeadArray data")
+    (description
+     "The package is able to read bead-level data (raw TIFFs and text files)
+output by BeadScan as well as bead-summary data from BeadStudio.  Methods for
+quality assessment and low-level analysis are provided.")
+    (license license:expat)))
+
 (define-public r-beadarraysnp
   (package
     (name "r-beadarraysnp")
-- 
2.39.2

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.