GNU bug report logs - #62428
gnu: Add r-anota2seq, r-hybridmtest, r-apalyzer, r-org-sc-sgd-db, r-apcomplex, r-mdqc, , r-parody, r-arraymvout, r-arrayquality, r-beaddatapackr, r-beadarray, r-arrayqualitymetrics, r-repmis, r-setrng..

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <62428 <at> debbugs.gnu.org.>
Subject: [bug#62428] [PATCH 06/14] gnu: Add r-apcomplex.
Date: Sat, 25 Mar 2023 00:18:52 +0100

* gnu/packages/bioconductor.scm (r-apcomplex): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 21aa3476c0..71d65d64a5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9420,6 +9420,31 @@ (define-public r-apalyzer
 expression analysis using RNA-seq data.")
     (license license:lgpl3)))
 
+(define-public r-apcomplex
+  (package
+    (name "r-apcomplex")
+    (version "2.64.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "apComplex" version))
+       (sha256
+        (base32 "0ycchrdhx7zh62f0p0gxm7g58m2w3c2lfkaasrwydspd3jx0rsna"))))
+    (properties `((upstream-name . "apComplex")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-graph
+           r-org-sc-sgd-db
+           r-rbgl
+           r-rgraphviz))
+    (home-page "https://bioconductor.org/packages/apComplex")
+    (synopsis "Estimate protein complex membership using AP-MS protein data")
+    (description
+     "This package provides functions to estimate a bipartite graph of protein
+complex membership using @acronym{AP-MS, affinity purification–mass spectrometry}
+data.")
+    (license license:lgpl2.0+)))
+
 (define-public r-apeglm
   (package
    (name "r-apeglm")
-- 
2.39.2

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