GNU bug report logs - #62428
gnu: Add r-anota2seq, r-hybridmtest, r-apalyzer, r-org-sc-sgd-db, r-apcomplex, r-mdqc, , r-parody, r-arraymvout, r-arrayquality, r-beaddatapackr, r-beadarray, r-arrayqualitymetrics, r-repmis, r-setrng..

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <62428 <at> debbugs.gnu.org.>
Subject: [bug#62428] [PATCH 07/14] gnu: Add r-mdqc.
Date: Sat, 25 Mar 2023 00:18:53 +0100

* gnu/packages/bioconductor.scm (r-mdqc): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 71d65d64a5..39367dd927 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6968,6 +6968,31 @@ (define-public r-maser
 and visualizaton of alternative splicing events generated by rMATS.")
     (license license:expat)))
 
+(define-public r-mdqc
+  (package
+    (name "r-mdqc")
+    (version "1.60.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "mdqc" version))
+       (sha256
+        (base32 "1hn6m0z8q3jnzb0h8m29khgm0cx81cfs3s1j6hlg4wsrwkha1i3w"))))
+    (properties `((upstream-name . "mdqc")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-cluster
+           r-mass))
+    (home-page "https://bioconductor.org/packages/mdqc")
+    (synopsis "Mahalanobis distance quality control for microarrays")
+    (description
+     "MDQC is a multivariate quality assessment method for microarrays based on
+quality control (QC) reports.  The Mahalanobis distance of an array's quality
+attributes is used to measure the similarity of the quality of that array
+against the quality of the other arrays.  Then, arrays with unusually high
+distances can be flagged as potentially low-quality.")
+    (license license:lgpl2.0+)))
+
 (define-public r-metagenomeseq
   (package
     (name "r-metagenomeseq")
-- 
2.39.2

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