GNU bug report logs - #62428
gnu: Add r-anota2seq, r-hybridmtest, r-apalyzer, r-org-sc-sgd-db, r-apcomplex, r-mdqc, , r-parody, r-arraymvout, r-arrayquality, r-beaddatapackr, r-beadarray, r-arrayqualitymetrics, r-repmis, r-setrng..

Previous Next

Full log

View this message in rfc822 format

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <62428 <at> debbugs.gnu.org.>
Subject: [bug#62428] [PATCH 03/14] gnu: Add r-hybridmtest.
Date: Sat, 25 Mar 2023 00:18:49 +0100

* gnu/packages/bioconductor.scm (r-hybridmtest): New variable.
---
 gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 37b649a7d6..c58613bea3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -16248,6 +16248,36 @@ (define-public r-rsbml
 validating output, provides an S4 SBML DOM, converts SBML to R graph objects.")
     (license license:artistic2.0)))
 
+(define-public r-hybridmtest
+  (package
+    (name "r-hybridmtest")
+    (version "1.42.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "HybridMTest" version))
+       (sha256
+        (base32 "0mv092lq8548l306ghgvh8yka1fnyvs7w1yzfjzcchj8vlsb0qns"))))
+    (properties `((upstream-name . "HybridMTest")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biobase
+           r-fdrtool
+           r-mass
+           r-survival))
+    (home-page "https://bioconductor.org/packages/HybridMTest")
+    (synopsis "Hybrid multiple testing")
+    (description
+     "This package performs hybrid multiple testing that incorporates method
+selection and assumption evaluations into the analysis using @acronym{EBP,
+empirical Bayes probability} estimates obtained by Grenander density estimation.
+For instance, for 3-group comparison analysis, Hybrid Multiple testing considers
+EBPs as weighted EBPs between F-test and H-test with EBPs from Shapiro Wilk test
+of normality as weigth.  Instead of just using EBPs from F-test only or using H-
+test only, this methodology combines both types of EBPs through EBPs from Shapiro
+Wilk test of normality.  This methodology uses then the law of total EBPs.")
+    (license license:gpl2+)))
+
 (define-public r-hypergraph
   (package
     (name "r-hypergraph")
-- 
2.39.2

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.