GNU bug report logs - #62297
[PATCH] gnu: Add r-affyilm, r-affyplm, r-affylmgui, r-annotationhubdata and r-tkrplot.

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Message #20 received at 62297 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <62297 <at> debbugs.gnu.org>
Subject: [PATCH 4/5] gnu: Add r-affylmgui.
Date: Mon, 20 Mar 2023 17:00:04 +0100

* gnu/packages/bioconductor.scm (r-affylmgui): New variable.
---
 gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e3753b2ec..78ce740c2c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2124,6 +2124,37 @@ (define-public r-affyilm
 of the Langmuir model.")
     (license license:gpl3)))
 
+(define-public r-affylmgui
+  (package
+    (name "r-affylmgui")
+    (version "1.72.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "affylmGUI" version))
+       (sha256
+        (base32 "0jds73pxqf522wcg8qd4b4k1qbhn51av5md1nhgcdnb6is0lzvxi"))))
+    (properties `((upstream-name . "affylmGUI")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-affy
+           r-affyio
+           r-affyplm
+           r-annotationdbi
+           r-biocgenerics
+           r-biocmanager
+           r-gcrma
+           r-limma
+           r-r2html
+           r-tkrplot
+           r-xtable))
+    (home-page "http://bioinf.wehi.edu.au/affylmGUI/")
+    (synopsis "GUI for limma package with Affymetrix microarrays")
+    (description
+     "This package provides a @acronym{GUI, Graphical User Interface} for analysis
+of Affymetrix microarray gene expression data using the affy and limma packages.")
+    (license license:gpl2+)))
+
 (define-public r-affyplm
   (package
     (name "r-affyplm")
-- 
2.39.2

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