GNU bug report logs - #62297
[PATCH] gnu: Add r-affyilm, r-affyplm, r-affylmgui, r-annotationhubdata and r-tkrplot.

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Message #14 received at 62297 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <62297 <at> debbugs.gnu.org>
Subject: [PATCH 1/5] gnu: Add r-affyilm.
Date: Mon, 20 Mar 2023 17:00:01 +0100

* gnu/packages/bioconductor.scm (r-affyilm): New variable.
---
 gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e54c9ccf2b..48aa426574 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2098,6 +2098,32 @@ (define-public r-affixcan
 expression values are known.")
     (license license:gpl3)))
 
+(define-public r-affyilm
+  (package
+    (name "r-affyilm")
+    (version "1.50.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "affyILM" version))
+       (sha256
+        (base32 "0i2hjaqjz06ym5kbw5da1h3cahc630mjwljsji1l2ks0gjcipll0"))))
+    (properties `((upstream-name . "affyILM")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-affxparser
+           r-affy
+           r-biobase
+           r-gcrma))
+    (home-page "https://bioconductor.org/packages/affyILM")
+    (synopsis "Linear model of background subtraction and the Langmuir isotherm")
+    (description
+     "The affyILM package is a preprocessing tool which estimates gene expression
+levels for Affymetrix Gene Chips.  Input from physical chemistry is employed to
+first background subtract intensities before calculating concentrations on behal
+of the Langmuir model.")
+    (license license:gpl3)))
+
 (define-public r-affyrnadegradation
   (package
     (name "r-affyrnadegradation")

base-commit: 1f36534c7e8f2325bff4df5d37ecc811dc63fc38
-- 
2.39.2

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