Subject: bug#62187: closed ([PATCH 1/2] gnu: Add r-premessa.)

From: [email-masked] (GNU bug Tracking System)
Date: Tue, 14 Mar 2023 18:14:02 +0000

Your bug report

#62187: [PATCH 1/2] gnu: Add r-premessa.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
62187: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=62187
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: [PATCH 1/2] gnu: Add r-premessa.
From: Ricardo Wurmus <[email-masked]>
To: [email-masked]
Date: Tue, 14 Mar 2023 19:13:18 +0100
List-Id: <debbugs-submit.debbugs.gnu.org>

Pushed with commit 204c51cac44809dc352c86bb33332fc75e2b0056.
I had to replace the bundled d3.min.js with a variant built from source.

Note that this is why the importer added esbuild (a JS compiler/bundler)
to the native inputs.

-- 
Ricardo

Subject: [PATCH 1/2] gnu: Add r-premessa.
From: Navid Afkhami <[email-masked]>
To: <[email-masked]>
Cc: Navid Afkhami <[email-masked]>
Date: Tue, 14 Mar 2023 15:01:29 +0000
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/bioinformatics.scm (r-premessa): New variable.
---
 gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++
 1 file changed, 37 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 06f9eb8ee3..7025ccd93d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8803,6 +8803,43 @@ (define-public r-pando
 regions for each transcription factor.")
     (license license:expat)))
 
+(define-public r-premessa
+  (let ((commit "68b42bb984637d0f3ad6a0ecc83e9278994afc85")
+        (revision "1"))
+    (package
+      (name "r-premessa")
+      (version (git-version "0.3.4" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/ParkerICI/premessa")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "1l0q431zk0lvg22130nx84gdqi7cpl05yah4am63lbx6m4c769pb"))))
+      (properties `((upstream-name . "premessa")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-data-table
+                               r-flowcore
+                               r-ggplot2
+                               r-gridextra
+                               r-hexbin
+                               r-jsonlite
+                               r-reshape
+                               r-rhandsontable
+                               r-shiny
+                               r-shinyjqui))
+      (native-inputs (list esbuild))
+      (home-page "https://github.com/ParkerICI/premessa")
+      (synopsis
+       "This package is for pre-processing of flow and mass cytometry data")
+      (description
+       "This is an R package for pre-processing of flow and mass cytometry data.
+This package includes panel editing or renaming for FCS files, bead-based
+normalization and debarcoding.")
+      (license license:gpl3))))
+
 (define-public r-presto
   (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
         (revision "0"))
-- 
2.34.1