GNU bug report logs - #61967
guix pack error with python packages

Previous Next

Full log

View this message in rfc822 format

From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: csantosb <at> inventati.org
Cc: tracker <at> debbugs.gnu.org
Subject: bug#61967: closed (guix pack error with python packages)
Date: Mon, 14 Aug 2023 09:00:03 +0000

[Message part 1 (text/plain, inline)]

Your message dated Mon, 14 Aug 2023 10:59:23 +0200
with message-id <87pm3qf186.fsf <at> inventati.org>
and subject line Fixed.
has caused the debbugs.gnu.org bug report #61967,
regarding guix pack error with python packages
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
61967: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=61967
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Cayetano Santos <cayetano.santos <at> inventati.org>
To: bug-guix <at> gnu.org
Subject: guix pack error with python packages
Date: Sat, 04 Mar 2023 20:35:01 +0100

Hello guix,

  I’m trying to deploy a test set of python packages to a remote server,
  using the following guix pack command (latest guix, as for now)

    guix pack -R --compression=xz --save-provenance \
    -S /.guix-profile/bin=bin -S /.guix-profile/share=share \
    -S /.guix-profile/etc=etc -S /.guix-profile/lib=lib \
    -S /.guix-profile/include=include

  The resulting file.tar.xz is sent to the server with

    scp file.tar.xz server:/dir1/dir2/.

  Then, when I

    ssh server
    cd /dir1/dir2

  I do a

    tar xf file.tar.xz

  At this point, a ’ls /dir1/dir2’ shows, as expected

    .guix-profile
    gnu
    file.tar.xz

  Now, when I just (PYTHONPATH is empty at this point)

    /dir1/dir2/.guix-profile/bin/python3 -c \
    "import sys; print(sys.path)"

  I get

    /dir1/dir2/hj...python...
    /dir1/dir2/hj...numpy...
    /dir1/dir2/hj...matplotlib...

  instead of

    /dir1/dir2/gnu/store/hj...python...
    /dir1/dir2/gnu/store/hj...numpy...
    /dir1/dir2/gnu/store/hj...matplotlib...

  so that when I

    /dir1/dir2/.guix-profile/bin/python3 -c "import numpyt"

  I get an error

    ModuleNotFoundError: No module named 'numpy'

  If, however, I

    export GUIX_PROFILE=/dir1/dir2/.guix-profile
    source $GUIX_PROFILE/etc/profile
    export PYTHONPATH=$GUIX_PYTHONPATH

  and then

    /dir1/dir2/.guix-profile/bin/python3

  I have

    Error processing line 1 of
    /dir1/dir2/.guix-profile/lib/python3.9/site-packages/matplotlib-3.5.2-py3.9-nspkg.pth:

  Trying to ’import numpy’ gives

    Traceback (most recent call last):
      File "<stdin>", line 1, in <module>
      File "/dir1/dir2/.guix-profile/lib/python3.9/site-packages/numpy/__init__.py", line 110, in <module>
    import warnings
      ModuleNotFoundError: No module named 'warnings'

  Am I doing something wrong ? Is this a bug ?

Thanks,

Cayetano Santos

[Message part 3 (message/rfc822, inline)]

From: Cayetano Santos <csantosb <at> inventati.org>
To: 61967-done <at> debbugs.gnu.org
Subject: Fixed.
Date: Mon, 14 Aug 2023 10:59:23 +0200

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.