From unknown Fri Aug 15 02:03:10 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#61854 <61854@debbugs.gnu.org> To: bug#61854 <61854@debbugs.gnu.org> Subject: Status: Reply-To: bug#61854 <61854@debbugs.gnu.org> Date: Fri, 15 Aug 2025 09:03:10 +0000 reassign 61854 guix-patches submitter 61854 M=C4=83d=C4=83lin Ionel Patra=C8=99cu severity 61854 normal thanks From debbugs-submit-bounces@debbugs.gnu.org Mon Feb 27 19:11:00 2023 Received: (at submit) by debbugs.gnu.org; 28 Feb 2023 00:11:00 +0000 Received: from localhost ([127.0.0.1]:49245 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWna7-0005PQ-M3 for submit@debbugs.gnu.org; Mon, 27 Feb 2023 19:11:00 -0500 Received: from lists.gnu.org ([209.51.188.17]:51496) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWna3-0005P7-7t for submit@debbugs.gnu.org; Mon, 27 Feb 2023 19:10:58 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWna2-0007Ux-VJ for guix-patches@gnu.org; Mon, 27 Feb 2023 19:10:54 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWna0-0004pZ-A1 for guix-patches@gnu.org; Mon, 27 Feb 2023 19:10:54 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1677543047; x=1679357448; bh=HDMDWLMQytAjtzt tL+xUJKqO2GKB87srB9D+9YddlDk=; b=l/zrrpoMrOxP47Wv7jtFCB26BWG4Zqh u6OTt4QBsP2yVhokL8p4M9MhdVJE7pikmV/YHv38pecYrgM5YWVlIC2Jn4edlmF6 UwnhLnLgkDYmUrZmcl0B72gg+7a+tr717cFJgpQXstJYvGjTErK1CNWRbirHOTy8 XlgS4L6vqgzE= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 48B79300195 for ; Tue, 28 Feb 2023 01:10:47 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Tue, 28 Feb 2023 01:10:46 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: Date: Tue, 28 Feb 2023 01:10:30 +0100 Message-ID: <20230228001030.2658-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 MIME-Version: 1.0 X-Debbugs-Cc: rekado@elephly.net Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27474.003 X-TM-AS-Result: No-10--7.086200-5.000000 X-TMASE-MatchedRID: jW4tXAdTjS8PK2Dvdm/TZqoXHZz/dXlxKQNhMboqZlrAuQ0xDMaXkH4q tYI9sRE/4K9FmervsqVz2t8dxyBOh9c7GbbghevGwyfpezjzqJUaJDwYgQY/f0J1hMCC63pY+jV zof0NuiOd0PCdDanA+u8j2/Qpcz48WUOK5XsuMf5wKlYjOzXY1YOp5DSDJZcHz1Sai+dGpAIQRH 1F2WksndqZE9Zpspux28e3EmHH26sUpJC1g+xv15WuG70ee86kPsGG+kQsvKgxkLdkW7C5qlJJq yIyDJiGDH7Bd+AnYlf0n5/2h+SNYFovEIqevDYH3QqJN4m15UHrixWWWJYrH1oi9s90jveGFEUk nJ/kEl7dB/CxWTRRu92KvEVWmYr1JlXQKbMWNZbcWiPlFseMIRgxy2wvL/1dMRfHOFExQgqzdB5 he+GGdQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--7.086200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27474.003 X-TM-SNTS-SMTP: 0CC8DF59A030C35D3A75A200BE8197B085885C41183EDB3634B36B483D7C30A72002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.6 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.4 (/) Date: Tue, 28 Feb 2023 01:07:34 +0100 Subject: [PATCH] gnu: Add r-chromomap. * gnu/packages/cran.scm (r-chromomap): New variable. --- gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c80e98134a..5af741674c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -306,6 +306,42 @@ (define-public r-changepoint ;; Any version of the GPL. (license license:gpl3+))) +;; The package sources include multiple non-mified js and v5.1.0 variant of d3.js +;; The d3.js file is also non-minified and the file mention the version and the +;; home-page. +(define-public r-chromomap + (package + (name "r-chromomap") + (version "4.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "chromoMap" version)) + (sha256 + (base32 "1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43")))) + (properties `((upstream-name . "chromoMap"))) + (build-system r-build-system) + (propagated-inputs (list r-htmltools r-htmlwidgets)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=chromoMap") + (synopsis "Interactive genomic visualization of biological data") + (description + "This package provides interactive, configurable and graphics visualization +of the chromosome regions of any living organism allowing users to map chromosome +elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special +plot viz. the \"chromosome heatmap\" that, in addition to mapping elements, can +visualize the data associated with chromosome elements (like gene expression) in +the form of heat colors. Users can investigate the detailed information about the +mappings (like gene names or total genes mapped on a location) or can view the +magnified single or double stranded view of the chromosome at a location showing +each mapped element in sequential order. The package provide multiple features +like visualizing multiple sets, chromosome heat-maps, group annotations, adding +hyperlinks, and labelling. The plots can be saved as HTML documents that can be +customized and shared easily. In addition, you can include them in R Markdown or +in R Shiny applications.") + (license (list license:gpl3 + license:isc )))) ;; for d3 bundled js + (define-public r-collections (package (name "r-collections") base-commit: 9ae4846c502b75867b83180bb65d422ff838e4e6 -- 2.39.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Mar 02 07:28:26 2023 Received: (at 61854-done) by debbugs.gnu.org; 2 Mar 2023 12:28:26 +0000 Received: from localhost ([127.0.0.1]:56046 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pXi2s-00045m-59 for submit@debbugs.gnu.org; Thu, 02 Mar 2023 07:28:26 -0500 Received: from sender3-of-o58.zoho.com ([136.143.184.58]:21873) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pXi2p-00045c-CG for 61854-done@debbugs.gnu.org; Thu, 02 Mar 2023 07:28:24 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1677760101; cv=none; d=zohomail.com; s=zohoarc; b=jFyA1UdOjWuUo+rWs7Jbl3pox2jgxJScqgQQOTdYdzn7DjAi/Wj8lx19O/GiqYG9EQ99MkzygDFs4wd6+GY3aa9GOF9yNHav40BDjwkO5t70LerGGE5vNhnq3BlPWsmXwC9cNsu48cMQkVw/ard8dRWUEQwHX+zyxhkGF6vNETk= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1677760101; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=Ga7HhsH6dMSZKaP6yVstIFN2oDvrhaV0rFswkeHIRsM=; b=kWrgoSRvTMWodw4S8QNF3xIcwRtfkeL14G+2chm44h6fBZu38OFHcApRPdvteMxCdRSLv6wR1cyRIRecUMIAlccv1js88QJTiSLJqV9O5hSCjjWEs5bNmKo1A49We88A9UcT/bVopGCdnm352FjWYhzLtGDwAEwCUURKz7RHPhE= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1677760101; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=Ga7HhsH6dMSZKaP6yVstIFN2oDvrhaV0rFswkeHIRsM=; b=bvh+jP0H3S5oL/VngePpaJLFd2yNk29Ne0Euv31r6uk+FgIGCSZKIgnoY50bUN9v 8ANPHd391dPEWrm86bsf3mUG3YHmVGUMmruzZyGbRaqEHYDGmRWFDaevtpaB2iKjP9a UIa5RyjeMHiTMTm1qRiDQ3V799a/kq267b2SWKuE= Received: from localhost (i5E862DD1.versanet.de [94.134.45.209]) by mx.zohomail.com with SMTPS id 1677760097389347.7740631719239; Thu, 2 Mar 2023 04:28:17 -0800 (PST) References: <20230228001030.2658-1-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.8.13; emacs 28.2 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#61854] Date: Thu, 02 Mar 2023 13:27:55 +0100 In-reply-to: <20230228001030.2658-1-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87bklbfich.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 61854-done Cc: 61854-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > Date: Tue, 28 Feb 2023 01:07:34 +0100 > Subject: [PATCH] gnu: Add r-chromomap. > > * gnu/packages/cran.scm (r-chromomap): New variable. Applied with commit a7763e067d86908210758aab80d33e4f8b815b1c. --=20 Ricardo From unknown Fri Aug 15 02:03:10 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 31 Mar 2023 11:24:08 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator