GNU bug report logs - #61838
[PAtCH] gnu: Add r-simplermarkdown, r-rcppspdlog, r-n2r, r-sccore, r-leidenalg, r-drat, r-dendsort, r-pagoda2, r-conospanel, r-p2data, r-pma, r-rmumps and r-conos.

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <61838 <at> debbugs.gnu.org>
Cc: rekado <at> elephly.net
Subject: [bug#61838] [PATCH 09/13] gnu: Add r-conos.
Date: Mon, 27 Feb 2023 11:28:46 +0100

* gnu/packages/bioconductor.scm (r-conos): New variable.
---
 gnu/packages/bioconductor.scm | 50 +++++++++++++++++++++++++++++++++++
 1 file changed, 50 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bc3bd8c930..333df756c9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5581,6 +5581,56 @@ (define-public r-complexheatmap
 self-defined annotation graphics.")
     (license license:gpl2+)))
 
+;;This package depends on r-complexheatmap
+(define-public r-conos
+  (package
+    (name "r-conos")
+    (version "1.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "conos" version))
+       (sha256
+        (base32 "1wdhb3jxh4id6xaghawzip8s264g9jxp4i5xy7jfhi67yfxszx6w"))))
+    (properties `((upstream-name . "conos")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-abind
+           r-complexheatmap
+           r-cowplot
+           r-dendextend
+           r-dplyr
+           r-ggplot2
+           r-ggrepel
+           r-gridextra
+           r-igraph
+           r-irlba
+           r-leidenalg
+           r-magrittr
+           r-matrix
+           r-n2r
+           r-r6
+           r-rcpp
+           r-rcpparmadillo
+           r-rcppeigen
+           r-rcppprogress
+           r-reshape2
+           r-rlang
+           r-rtsne
+           r-sccore
+))
+    (home-page "https://github.com/kharchenkolab/conos")
+    (synopsis "Clustering on network of samples")
+    (description
+     "This package wires together large collections of single-cell RNA-seq datasets,
+which allows for both the identification of recurrent cell clusters and the propagation
+of information between datasets in multi-sample or atlas-scale collections.  Conos
+focuses on the uniform mapping of homologous cell types across heterogeneous sample
+collections.  For instance, users could investigate a collection of dozens of
+peripheral blood samples from cancer patients combined with dozens of controls,
+which perhaps includes samples of a related tissue such as lymph nodes.")
+    (license license:gpl3)))
+
 (define-public r-copywriter
   (package
     (name "r-copywriter")
-- 
2.39.1

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