From unknown Sun Jun 15 09:01:19 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#61575] [PATCH] gnu: r-doubletcollection: Update to (git-version 1.1.0 revision commit). Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 17 Feb 2023 15:04:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 61575 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61575@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.16766461967957 (code B ref -1); Fri, 17 Feb 2023 15:04:02 +0000 Received: (at submit) by debbugs.gnu.org; 17 Feb 2023 15:03:16 +0000 Received: from localhost ([127.0.0.1]:40991 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pT2Ga-00024G-0q for submit@debbugs.gnu.org; Fri, 17 Feb 2023 10:03:16 -0500 Received: from lists.gnu.org ([209.51.188.17]:41724) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pT2GY-000245-65 for submit@debbugs.gnu.org; Fri, 17 Feb 2023 10:03:14 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pT2GX-0001D9-Ja for guix-patches@gnu.org; Fri, 17 Feb 2023 10:03:13 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pT2GU-0005zo-IN for guix-patches@gnu.org; Fri, 17 Feb 2023 10:03:12 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1676646185; x=1678460586; bh=0W1SWwrtJj2WDFn XiTWPymGxHtifykGFyKziSBSFJRY=; b=ZcCGe2twvj3i/FXgX5+Vc+ZUtStenB4 HhrRf6SsO+JyFrpQMr3+Zz0nGtTMFtMGuVZulmhmxBp25i8n9k66vColtaJeALoV CRD2ya8LEFzLNiaTn3gO7XqB8t5DmgTGUUqVjXkumgHRM6hc1/K8NL9Zudi+AZw5 VaeyDlAD16kE= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id C9C3A30018D for ; Fri, 17 Feb 2023 16:03:03 +0100 (CET) Received: from localhost.localdomain (10.84.128.79) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Fri, 17 Feb 2023 16:03:02 +0100 From: Navid Afkhami Date: Fri, 17 Feb 2023 16:02:52 +0100 Message-ID: <20230217150252.44540-1-navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [10.84.128.79] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27454.000 X-TM-AS-Result: No-10--2.565400-5.000000 X-TMASE-MatchedRID: IjxuEg3WW4oexiL4/gRNNVCxqE4whnXlyiKgKtIyB4rozDhGeQC9Er8F Hrw7frluf146W0iUu2sli4SAu2eL9NG5/ZtK3riSnVTWWiNp+v/GrCYQ4FUp6mONwuoLObkfdSX 1HP0/ogZ9LQinZ4QefPcjNeVeWlqY+gtHj7OwNO22utO5qEfOUQyJ9wRH3iAyTEFueuSRtcFXzB R1UFVOuHvMTUaaXQFk9lKinkO3xPBkqIbwu99YpwQZ5olkyYmUM+63xJ1HiUAPRh8vMunnwXQJ8 8ZHP8DjvmJf6uotZp79ZjtYmCyQ6k+HGwSCjLh6vuvB6gAgryg= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.565400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27454.000 X-TM-SNTS-SMTP: 7422FE07BE84EEB04CEF7C2A39A634C5E2102358851D66E3D0311312E551F8152002:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.4 (--) * gnu/packages/bioinformatics.scm (r-doubletcollection): Update to (git-version 1.1.0 revision commit). [propagated-inputs]: Add r-minimal, python, python-scrublet, and python-doubletdetection. --- gnu/packages/bioinformatics.scm | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9470e6eb1a..515e390fa1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8488,7 +8488,11 @@ (define-public r-doubletcollection r-seurat r-singlecellexperiment r-slingshot - r-summarizedexperiment)) + r-summarizedexperiment + r-minimal + python + python-scrublet + python-doubletdetection)) (home-page "https://github.com/xnnba1984/DoubletCollection") (synopsis "Tool for finding doublets in scRNA-seq data") (description -- 2.34.1 From unknown Sun Jun 15 09:01:19 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Navid Afkhami Subject: bug#61575: closed ([PATCH] gnu: r-doubletcollection: Add missing inputs) Message-ID: References: <87ilfel4ge.fsf@elephly.net> <20230217150252.44540-1-navid.afkhami@mdc-berlin.de> X-Gnu-PR-Message: they-closed 61575 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 61575@debbugs.gnu.org Date: Mon, 06 Mar 2023 07:34:01 +0000 Content-Type: multipart/mixed; boundary="----------=_1678088041-9970-1" This is a multi-part message in MIME format... ------------=_1678088041-9970-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #61575: [PATCH] gnu: r-doubletcollection: Update to (git-version 1.1.0 revi= sion commit). which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 61575@debbugs.gnu.org. --=20 61575: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D61575 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1678088041-9970-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 61575-done) by debbugs.gnu.org; 6 Mar 2023 07:33:16 +0000 Received: from localhost ([127.0.0.1]:41224 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pZ5LQ-0002Zs-Iy for submit@debbugs.gnu.org; Mon, 06 Mar 2023 02:33:16 -0500 Received: from sender3-of-o59.zoho.com ([136.143.184.59]:21987) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pZ5LO-0002Zh-Ch for 61575-done@debbugs.gnu.org; Mon, 06 Mar 2023 02:33:15 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1678087991; cv=none; d=zohomail.com; s=zohoarc; b=Hbj482ST+QSU5REOCX4BcQvGWbGFbtEy/Slyty8I7hf67korIJ9BQPU7IAVnMfkZH3xq9gC4TbVQQBfgNGo5cfSRGSclqYdwPkJDHB4UxxSwV/uPnDyEpNMJxXkM2VWVbNf2kKVZDR8Ja8VpJLYq+7JZQD5Rw6vxIJlj1vp18z0= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1678087991; h=Content-Type:Content-Transfer-Encoding:Date:From:MIME-Version:Message-ID:Subject:To; bh=hN2C/Wx4oyEYcEF6a6h9EOkgN9aNJ3XYK3w4HGURm9Y=; b=VAjbvEoLJrAJyOGzl2Enk2nBNzIcx5VHhlCv7Mpk2hMiTdLUlYCOa/dkT2nL8DnS6eZKj8KuOq9zfOeOPEyB2WfUB83SE7OpeXTh6A48FDy+a/q6EOR/JGDc335eGVQPJZ086umyTNvdO/jbbWkGjgAZjch8y3DONEs8ZgWTCTs= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1678087991; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To:Cc; bh=hN2C/Wx4oyEYcEF6a6h9EOkgN9aNJ3XYK3w4HGURm9Y=; b=W3mdjhkTr9FxnB+rUQXWjVMMMnfpUL6C+31sZxJGx6PQTj29qqoePw+GrqqmBD72 5VtHqrQOnbvKDj0i2+EyqVdX5udgVT9UyAyMGRYlBs+H9e+mzj7dLqMRqhjigEhM8si 2mIV8ElSVmy6QmkMIGkKsQvupUf9UJIQkO0+0uKE= Received: from localhost (i5E862D69.versanet.de [94.134.45.105]) by mx.zohomail.com with SMTPS id 1678087988946746.3733232174444; Sun, 5 Mar 2023 23:33:08 -0800 (PST) User-agent: mu4e 1.8.13; emacs 28.2 From: Ricardo Wurmus To: 61575-done@debbugs.gnu.org Subject: [PATCH] gnu: r-doubletcollection: Add missing inputs Date: Mon, 06 Mar 2023 08:32:16 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87ilfel4ge.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 61575-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) I=E2=80=99ve removed r-minimal from the packages and changed the commit mes= sage before pushing it. Thanks! --=20 Ricardo ------------=_1678088041-9970-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 17 Feb 2023 15:03:16 +0000 Received: from localhost ([127.0.0.1]:40991 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pT2Ga-00024G-0q for submit@debbugs.gnu.org; Fri, 17 Feb 2023 10:03:16 -0500 Received: from lists.gnu.org ([209.51.188.17]:41724) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pT2GY-000245-65 for submit@debbugs.gnu.org; Fri, 17 Feb 2023 10:03:14 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pT2GX-0001D9-Ja for guix-patches@gnu.org; Fri, 17 Feb 2023 10:03:13 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pT2GU-0005zo-IN for guix-patches@gnu.org; Fri, 17 Feb 2023 10:03:12 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1676646185; x=1678460586; bh=0W1SWwrtJj2WDFn XiTWPymGxHtifykGFyKziSBSFJRY=; b=ZcCGe2twvj3i/FXgX5+Vc+ZUtStenB4 HhrRf6SsO+JyFrpQMr3+Zz0nGtTMFtMGuVZulmhmxBp25i8n9k66vColtaJeALoV CRD2ya8LEFzLNiaTn3gO7XqB8t5DmgTGUUqVjXkumgHRM6hc1/K8NL9Zudi+AZw5 VaeyDlAD16kE= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id C9C3A30018D for ; Fri, 17 Feb 2023 16:03:03 +0100 (CET) Received: from localhost.localdomain (10.84.128.79) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Fri, 17 Feb 2023 16:03:02 +0100 From: Navid Afkhami To: Subject: [PATCH] gnu: r-doubletcollection: Update to (git-version 1.1.0 revision commit). 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[propagated-inputs]: Add r-minimal, python, python-scrublet, and python-doubletdetection. --- gnu/packages/bioinformatics.scm | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9470e6eb1a..515e390fa1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8488,7 +8488,11 @@ (define-public r-doubletcollection r-seurat r-singlecellexperiment r-slingshot - r-summarizedexperiment)) + r-summarizedexperiment + r-minimal + python + python-scrublet + python-doubletdetection)) (home-page "https://github.com/xnnba1984/DoubletCollection") (synopsis "Tool for finding doublets in scRNA-seq data") (description -- 2.34.1 ------------=_1678088041-9970-1--