GNU bug report logs - #61439
[PATCH 0/4] gnu: Add JuliaAstro core packages.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: guix-patches <at> gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 0/4] gnu: Add JuliaAstro core packages.
Date: Sat, 11 Feb 2023 21:48:30 +0000

Hi Guix!

I'm on the track with JuliaAstro mentioned in #60793 :) 

This patch series includes 2x JLL and their implementation for Julia - ERFA and
WCS which are core packages to grow the tree on top of them.

x86_64 bulid passed succes:
> ./pre-inst-env guix build julia-erfa-jll julia-wcs-jll julia-erfa julia-wcs --rounds=2
> /gnu/store/mcdha3hmirsx56y22dq2axvqbfzp4053-julia-wcs-0.6.2
> /gnu/store/2wid9f05sxm619ihykkfalc6nv7ndw5v-julia-erfa-1.1.0
> /gnu/store/q6vvqim7r1fsq0yhbjy6zdzdfkd287sx-julia-wcs-jll-7.7.0+0
> /gnu/store/pnzdlnvvs99pzn8bp9j9k13mxi8ah6qc-julia-erfa-jll-2.0.0+0

aarch64 bulid in Qemue failed:
> ./pre-inst-env guix build julia-erfa-jll julia-wcs-jll julia-erfa julia-wcs --system=aarch64-linux
> ...
> phase `install' succeeded after 0.0 seconds
> starting phase `check'
> signal (11): Segmentation fault
> in expression starting at none:0
> Timer#663 at ./asyncevent.jl:109
> Timer at ./asyncevent.jl:94 [inlined]
> sleep at ./asyncevent.jl:240
> #44 at ./task.jl:484
> unknown function (ip: 0x555a44469f)
> jl_apply at /tmp/guix-build-julia-1.8.3.drv-0/julia-1.8.3/src/julia.h:1839 [inlined]
> start_task at /tmp/guix-build-julia-1.8.3.drv-0/julia-1.8.3/src/task.c:931
> Allocations: 2560514 (Pool: 2559192; Big: 1322); GC: 3
> qemu: uncaught target signal 11 (Segmentation fault) - core dumped
> error: in phase 'check': uncaught exception:
> %exception #<&invoke-error program: "julia" arguments: ("--depwarn=yes" "--procs=15" "/gnu/store/i588g3iyz4h4p6nb0qiy7hks6chl787v-julia-erfa-1.1.0/share/julia/loadpath/ERFA/test/runtests.jl") exit-status: #f term-signal: 11 stop-signal: #f>
> phase `check' failed after 7.0 seconds
> command "julia" "--depwarn=yes" "--procs=15" "/gnu/store/i588g3iyz4h4p6nb0qiy7hks6chl787v-julia-erfa-1.1.0/share/julia/loadpath/ERFA/test/runtests.jl" failed with signal 11
> builder for `/gnu/store/3kg912881g0anxm3fsvcdvnb3s3arjqs-julia-erfa-1.1.0.drv' failed with exit code 1
> build of /gnu/store/3kg912881g0anxm3fsvcdvnb3s3arjqs-julia-erfa-1.1.0.drv failed
> View build log at '/var/log/guix/drvs/3k/g912881g0anxm3fsvcdvnb3s3arjqs-julia-erfa-1.1.0.drv.gz'.
> guix build: error: build of `/gnu/store/3kg912881g0anxm3fsvcdvnb3s3arjqs-julia-erfa-1.1.0.drv' failed

Sharlatan Hellseher (4):
  gnu: Add julia-erfa-jll.
  gnu: Add julia-wcs-jll.
  gnu: Add julia-erfa.
  gnu: Add julia-wcs.

 gnu/packages/julia-jll.scm | 74 ++++++++++++++++++++++++++++++++++++++
 gnu/packages/julia-xyz.scm | 44 +++++++++++++++++++++++
 2 files changed, 118 insertions(+)


base-commit: b367f28ed2ac8212d3c8b826b9655a0b2e879f18
-- 
2.39.1

Message #8 received at 61439 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 61439 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 1/4] gnu: Add julia-erfa-jll.
Date: Sat, 11 Feb 2023 21:50:35 +0000

* gnu/packages/julia-jll.scm (julia-erfa-jll): New variable.
---
 gnu/packages/julia-jll.scm | 36 ++++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/gnu/packages/julia-jll.scm b/gnu/packages/julia-jll.scm
index 1aab2f78ce..77bb3ff3d5 100644
--- a/gnu/packages/julia-jll.scm
+++ b/gnu/packages/julia-jll.scm
@@ -232,6 +232,42 @@ (define-public julia-compilersupportlibraries-jll
 build tree Yggdrasil.")
     (license license:expat)))
 
+(define-public julia-erfa-jll
+  (package
+    (name "julia-erfa-jll")
+    (version "2.0.0+0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaBinaryWrappers/ERFA_jll.jl")
+             (commit (string-append "ERFA-v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0knlck3vqr19g9z8zgjr7lj0qf1lisji5s2lm00y3ymv9bkj59sl"))))
+    (build-system julia-build-system)
+    (arguments
+     '(#:tests? #f ;no runtests
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'link-depot 'override-binary-path
+           (lambda* (#:key inputs #:allow-other-keys)
+             (map (lambda (wrapper)
+                    (substitute* wrapper
+                      (("generate_wrapper_header.*")
+                       (string-append
+                        "generate_wrapper_header(\"ERFA\", \""
+                        (assoc-ref inputs "erfa") "\")\n"))))
+                  ;; There's a Julia file for each platform, override them all
+                  (find-files "src/wrappers/" "\\.jl$")))))))
+    (inputs (list erfa))
+    (propagated-inputs (list julia-jllwrappers))
+    (home-page "https://github.com/JuliaBinaryWrappers/ERFA_jll.jl")
+    (synopsis "ERFA library wrappers")
+    (description "This package provides a wrapper for the erfa library.")
+    (license license:expat)))
+
 (define-public julia-expat-jll
   (package
     (name "julia-expat-jll")
-- 
2.39.1

Message #11 received at 61439 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 61439 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 3/4] gnu: Add julia-erfa.
Date: Sat, 11 Feb 2023 21:50:37 +0000

* gnu/packages/julia-xyz.scm (julia-erfa): New variable.
---
 gnu/packages/julia-xyz.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index b6da796b59..8f2b29193a 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -1852,6 +1852,27 @@ (define-public julia-ellipsisnotation
 before (or after)\".")
     (license license:expat)))
 
+(define-public julia-erfa
+  (package
+    (name "julia-erfa")
+    (version "1.1.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaAstro/ERFA.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1f63kyqpsx9n4dh54hzy1bvm3fpl4vf8wi1279vfiza3vhh2ggx5"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     (list julia-erfa-jll julia-staticarrays))
+    (home-page "https://github.com/JuliaAstro/ERFA.jl")
+    (synopsis "Julia wrapper for liberfa")
+    (description "This package provides a Julia wrapper for astronomical library ERFA.")
+    (license license:expat)))
+
 (define-public julia-example
   (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388"))
     (package
-- 
2.39.1

Message #14 received at 61439 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 61439 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 2/4] gnu: Add julia-wcs-jll.
Date: Sat, 11 Feb 2023 21:50:36 +0000

* gnu/packages/julia-jll.scm (julia-wcs-jll): New variable.
---
 gnu/packages/julia-jll.scm | 38 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

diff --git a/gnu/packages/julia-jll.scm b/gnu/packages/julia-jll.scm
index 77bb3ff3d5..2320b03595 100644
--- a/gnu/packages/julia-jll.scm
+++ b/gnu/packages/julia-jll.scm
@@ -1763,6 +1763,44 @@ (define-public julia-wayland-protocols-jll
     (description "This package provides a wrapper for the wayland-protocols library.")
     (license license:expat)))
 
+(define-public julia-wcs-jll
+  (package
+    (name "julia-wcs-jll")
+    (version "7.7.0+0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaBinaryWrappers/WCS_jll.jl")
+             (commit (string-append "WCS-v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "16i9899jwcp5i9mh88rn4b83v3i5v8g1jygixrr0grjnvf5qfvpk"))))
+    (build-system julia-build-system)
+    (arguments
+     '(#:tests? #f  ; no runtests
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'link-depot 'override-binary-path
+           (lambda* (#:key inputs #:allow-other-keys)
+             (map
+              (lambda (wrapper)
+                (substitute* wrapper
+                  (("generate_wrapper_header.*")
+                   (string-append
+                    "generate_wrapper_header(\"WCS\", \""
+                    (assoc-ref inputs "wcslib") "\")\n"))))
+              ;; There's a Julia file for each platform, override them all
+              (find-files "src/wrappers/" "\\.jl$")))))))
+    (inputs
+     (list wcslib))
+    (propagated-inputs
+     (list julia-jllwrappers))
+    (home-page "https://github.com/JuliaBinaryWrappers/WCS_jll.jl")
+    (synopsis "WCS library wrappers")
+    (description "This package provides a wrapper for the wcs library.")
+    (license license:expat)))
+
 (define-public julia-x264-jll
   (package
     (name "julia-x264-jll")
-- 
2.39.1

Message #17 received at 61439 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 61439 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 4/4] gnu: Add julia-wcs.
Date: Sat, 11 Feb 2023 21:50:38 +0000

* gnu/packages/julia-xyz.scm (julia-wcs): New variable.
---
 gnu/packages/julia-xyz.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 8f2b29193a..82429c957d 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -6141,6 +6141,29 @@ (define-public julia-versionparsing
 \"foreign\" version numbers from external packages.")
     (license license:expat)))
 
+(define-public julia-wcs
+  (package
+    (name "julia-wcs")
+    (version "0.6.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaAstro/WCS.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0ala8j4mh51gh14k3npcxmnlj2f00l0pij74qz453iqadb2283mi"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     (list julia-constructionbase julia-wcs-jll))
+    (home-page "https://github.com/JuliaAstro/WCS.jl")
+    (synopsis "Astronomical WCS library for Julia")
+    (description "Astronomical @url{World Coordinate System,
+https://www.atnf.csiro.au/people/mcalabre/WCS/} library for Julia.  This package
+wraps the WCSLIB C library.")
+    (license license:expat)))
+
 (define-public julia-weakrefstrings
   (package
     (name "julia-weakrefstrings")
-- 
2.39.1

Message #20 received at 61439 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: Sharlatan Hellseher <sharlatanus <at> gmail.com>, 61439 <at> debbugs.gnu.org,
 Efraim Flashner <efraim <at> flashner.co.il>
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: Re: [bug#61439] [PATCH 0/4] gnu: Add JuliaAstro core packages.
Date: Wed, 15 Feb 2023 12:30:46 +0100

Hi,

On Sat, 11 Feb 2023 at 21:48, Sharlatan Hellseher <sharlatanus <at> gmail.com> wrote:

> Sharlatan Hellseher (4):
>   gnu: Add julia-erfa-jll.
>   gnu: Add julia-wcs-jll.
>   gnu: Add julia-erfa.
>   gnu: Add julia-wcs.
>
>  gnu/packages/julia-jll.scm | 74 ++++++++++++++++++++++++++++++++++++++
>  gnu/packages/julia-xyz.scm | 44 +++++++++++++++++++++++
>  2 files changed, 118 insertions(+)

This series LGTM.

Cheers,
simon

Message #25 received at 61439-done <at> debbugs.gnu.org (full text, mbox):

From: Efraim Flashner <efraim <at> flashner.co.il>
To: zimoun <zimon.toutoune <at> gmail.com>
Cc: 61439-done <at> debbugs.gnu.org, Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: Re: [bug#61439] [PATCH 0/4] gnu: Add JuliaAstro core packages.
Date: Wed, 15 Feb 2023 19:31:46 +0200

[Message part 1 (text/plain, inline)]

On Wed, Feb 15, 2023 at 12:30:46PM +0100, zimoun wrote:
> Hi,
> 
> On Sat, 11 Feb 2023 at 21:48, Sharlatan Hellseher <sharlatanus <at> gmail.com> wrote:
> 
> > Sharlatan Hellseher (4):
> >   gnu: Add julia-erfa-jll.
> >   gnu: Add julia-wcs-jll.
> >   gnu: Add julia-erfa.
> >   gnu: Add julia-wcs.
> >
> >  gnu/packages/julia-jll.scm | 74 ++++++++++++++++++++++++++++++++++++++
> >  gnu/packages/julia-xyz.scm | 44 +++++++++++++++++++++++
> >  2 files changed, 118 insertions(+)
> 
> This series LGTM.

Looks good to me too.

Patches pushed!

-- 
Efraim Flashner   <efraim <at> flashner.co.il>   אפרים פלשנר
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