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Date: Thu, 2 Feb 2023 17:00:22 +0100 Message-ID: <20230202160023.45975-1-navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [10.84.128.47] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27424.000 X-TM-AS-Result: No-10--1.107300-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXR6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VL6p xbTOjavycW3/J21vqoVXOLTjXPci/yq+GZ9ZHxIhuW77/y896sjb4QM/D7zGt0JZ5MDd4/kU5wM PMqdPNSzns4projbTGT3mnWKOM3JF5UcZtwNsCroURSScn+QSXhhJCIHRlO51+gtHj7OwNO22ut O5qEfOUXI4Nf39Ohr8tK/Zg5sgElcpl+tEyIt7+AhAiMmxd1U+EeTv/avrG+qQlI1R8BktUFk9y 0x1JyPRiyu7pv5683MOeLzJ7zyIOHQJ88ZHP8DjvmJf6uotZp79ZjtYmCyQ6k+HGwSCjLh6vuvB 6gAgryg= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.107300-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27424.000 X-TM-SNTS-SMTP: 2ABF608266911343DCF244D0635AF350DC8A44983652684217B58A95F500DB2F2002:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/bioinformatics.scm (python-pegasusio): New variable. --- gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 714db27c16..6caf0e4cfa 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1136,6 +1136,36 @@ (define-public python-htsget servers supporting the protocol.") (license license:asl2.0))) +(define-public python-pegasusio + (package + (name "python-pegasusio") + (version "0.7.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "pegasusio" version)) + (sha256 + (base32 + "0gqygspdy398vjymdy6756jmk99s7fhwav9rivdx59kpqjcdxaz9")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-anndata + python-docopt + python-h5py + python-importlib-metadata + python-loompy + python-natsort + python-numpy + python-pandas + python-pillow + python-scipy + python-zarr)) + (native-inputs (list python-cython python-setuptools-scm)) + (home-page "https://github.com/lilab-bcb/pegasusio") + (synopsis + "Pegasusio is a Python package for reading or writing single-cell genomics data") + (description + "Pegasusio is a Python package for reading or writing single-cell genomics data.") + (license license:bsd-3))) + (define-public python-phylophlan (package (name "python-phylophlan") -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Feb 02 18:26:22 2023 Received: (at 61230-done) by debbugs.gnu.org; 2 Feb 2023 23:26:22 +0000 Received: from localhost ([127.0.0.1]:36128 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNiyE-00018Y-2q for submit@debbugs.gnu.org; Thu, 02 Feb 2023 18:26:22 -0500 Received: from sender3-of-o57.zoho.com ([136.143.184.57]:21742) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pNiyC-00018Q-Jk for 61230-done@debbugs.gnu.org; Thu, 02 Feb 2023 18:26:21 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1675380377; cv=none; d=zohomail.com; s=zohoarc; b=kmVVwuSXmzVYD620Rs2bXYw8/shSnxZ2oxlg7DLVg6rSxaNfUaX5DRdeBP40N7rtksk/zTTAN30ggZs4Invir/UBfAS7rrUElwpPRpJHuAWLFVu/LXt2FY1U2l0tuVKfuYwhFj60lQwB6KqtkuaL3o6KjT49nia99IEmEG/0Zr4= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1675380377; h=Content-Type:Date:From:MIME-Version:Message-ID:Subject:To; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=ljOvmTt2g0irC+BcvWW4uCOPA6Guo4KZxuI1pim7nC4ZZCwQJ8v+h1IyjLhifpE2GUdAcSlt39EsezgKgfYCtopt9VxZ4q3wp/qgCMGjx1O9gq/9ItY2oKxiHT3qRMUl1eyHWjqAdNmplb6G2gKnI3tGpw43D0RzBiYPc7ohXhA= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1675380377; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=eCDO0xpw7/ALFK0XUZ6a3LYVeh+Y9SXkui3D3qiteGTXhqFElyxy0GEK+qx7jq6q dKGF8wKTPldz4IlzphNlfQKMuLiiQFGCqJUzvaWAsFMN/k+E6lqnWqc44aRu6wD8Ydt sw/b7tQ/i3oLJhZMPyfj0GNC5JKYT1U9WqADj68M= Received: from localhost (i5E862C45.versanet.de [94.134.44.69]) by mx.zohomail.com with SMTPS id 1675380375446788.8574824560618; Thu, 2 Feb 2023 15:26:15 -0800 (PST) User-agent: mu4e 1.8.13; emacs 28.2 From: Ricardo Wurmus To: 61230-done@debbugs.gnu.org Subject: [PATCH 1/2] gnu: Add python-pegasusio. 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