GNU bug report logs - #61220
[patch] gnu: Add r-glad, r-italicsdata, r-pd-mapping50k-xba240, r-italics, r-manor, r-tilingarray, r-snapcgh, r-quantsmooth, r-beadarraysnp and r-adacgh2.

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <61220 <at> debbugs.gnu.org>
Cc: rekado <at> elephly.net
Subject: [bug#61220] [PATCH 01/10] gnu: Add r-glad.
Date: Thu, 2 Feb 2023 03:26:48 +0100

* gnu/packages/bioconductor.scm (r-glad): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 711b988e7f..451dcfde86 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6122,6 +6122,31 @@ (define-public r-genomicranges
 manipulating genomic intervals and variables defined along a genome.")
     (license license:artistic2.0)))
 
+(define-public r-glad
+  (package
+    (name "r-glad")
+    (version "2.62.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "GLAD" version))
+              (sha256
+               (base32
+                "0gb52ic5r6nkgm2ynm174vcvbmkbhhjgv71lsmxpxzcsb6rr7qj6"))))
+    (properties `((upstream-name . "GLAD")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list gsl
+           r-aws))
+    (native-inputs (list pkg-config))
+    (home-page "http://bioinfo.curie.fr")
+    (synopsis "Gain and loss analysis of DNA")
+    (description
+     "This package helps with the analysis of array @acronym{CGH, comparative
+genomic hybridization} data by detecting of the breakpoints in the genomic profiles
+and assignment of a status (gain, normal or loss) to each chromosomal regions
+identified.")
+    (license license:gpl2)))
+
 (define-public r-gostats
   (package
     (name "r-gostats")

base-commit: 6564a04efaf506a5ef51a7c100144fa31bbe1f31
-- 
2.39.1

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