GNU bug report logs - #61220
[patch] gnu: Add r-glad, r-italicsdata, r-pd-mapping50k-xba240, r-italics, r-manor, r-tilingarray, r-snapcgh, r-quantsmooth, r-beadarraysnp and r-adacgh2.

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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <61220 <at> debbugs.gnu.org>
Cc: rekado <at> elephly.net
Subject: [bug#61220] [PATCH 06/10] gnu: Add r-tilingarray.
Date: Thu, 2 Feb 2023 03:26:53 +0100

* gnu/packages/bioconductor.scm (r-tilingarray): New variable.
---
 gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3339c751cb..f692114754 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14960,6 +14960,46 @@ (define-public r-wavcluster
 procedures that induce nucleotide substitutions (e.g. BisSeq).")
     (license license:gpl2)))
 
+(define-public r-tilingarray
+  (package
+    (name "r-tilingarray")
+    (version "1.76.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "tilingArray" version))
+              (sha256
+               (base32
+                "19bkgblpkcp3w3sdyn82c37gkz1sv3r4d546zpbnh36q2pi3l4zd"))))
+    (properties `((upstream-name . "tilingArray")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-affy
+           r-biobase
+           r-genefilter
+           r-pixmap
+           r-rcolorbrewer
+           r-strucchange
+           r-vsn))
+    (home-page "https://bioconductor.org/packages/tilingArray")
+    (synopsis "Transcript mapping with high-density oligonucleotide tiling arrays")
+    (description
+     "The package provides functionality that can be useful for the analysis of
+the high-density tiling microarray data (such as from Affymetrix genechips) or for
+measuring the transcript abundance and the architecture.  The main functionalities
+of the package are:
+@enumerate
+@item the class segmentation for representing partitionings of a linear series of
+data;
+@item the function segment for fitting piecewise constant models using a dynamic
+programming algorithm that is both fast and exact;
+@item the function confint for calculating confidence intervals using the strucchange
+package;
+@item the function plotAlongChrom for generating pretty plots;
+@item the function normalizeByReference for probe-sequence dependent response
+adjustment from a (set of) reference hybridizations.
+@end enumerate")
+    (license license:artistic2.0)))
+
 (define-public r-timeseriesexperiment
   (package
     (name "r-timeseriesexperiment")
-- 
2.39.1

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