Subject: [PATCH 08/10] gnu: Add r-quantsmooth.

From: Mădălin Ionel Patrașcu<[email-masked]>
Date: Thu, 2 Feb 2023 03:26:55 +0100

* gnu/packages/bioconductor.scm (r-quantsmooth): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bce8319dcb..07207ebc38 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8738,6 +8738,33 @@ (define-public r-oligo
 Affymetrix (CEL files) and NimbleGen arrays (XYS files).")
     (license license:lgpl2.0+)))
 
+(define-public r-quantsmooth
+  (package
+    (name "r-quantsmooth")
+    (version "1.64.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "quantsmooth" version))
+       (sha256
+        (base32 "1adwws3brb01d4g6yidipnd8akkiyc3gpdr876hy57qnmcq8xipp"))))
+    (properties `((upstream-name . "quantsmooth")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-quantreg))
+    (home-page "https://bioconductor.org/packages/quantsmooth")
+    (synopsis "Quantile smoothing and genomic visualization of array data")
+    (description
+     "This package implements quantile smoothing.  It contains a dataset used to
+produce human chromosomal ideograms for plotting purposes and a collection of
+arrays that contains data of chromosome 14 of 3 colorectal tumors.  The package
+provides functions for painting chromosomal icons, chromosme or chromosomal
+idiogram and other types of plots.  Quantsmooth offers options like converting
+chromosomal ids to their numeric form, retrieving the human chromosomal length
+from NCBI data, retrieving regions of interest in a vector of intensities using
+quantile smoothing, determining cytoband position based on the location of the
+probe, and other useful tools.")
+    (license license:gpl2)))
+
 (define-public r-qvalue
   (package
     (name "r-qvalue")
-- 
2.39.1