GNU bug report logs - #61148
[PATCH 0/5] Update vcflib

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Efraim Flashner <efraim <at> flashner.co.il>
Subject: bug#61148: closed (Re: [PATCH 0/5] Update vcflib)
Date: Tue, 18 Mar 2025 20:09:02 +0000

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Your bug report

#61148: [PATCH 0/5] Update vcflib

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 61148 <at> debbugs.gnu.org.

-- 
61148: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=61148
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Nicolas Goaziou <mail <at> nicolasgoaziou.fr>
To: 61148-done <at> debbugs.gnu.org
Subject: Re: [PATCH 0/5] Update vcflib
Date: Tue, 18 Mar 2025 21:08:05 +0100

vcflib is already at a higher version. Closing.

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From: Efraim Flashner <efraim <at> flashner.co.il>
To: guix-patches <at> gnu.org
Cc: Pjotr Prins <pjotr.public01 <at> thebird.nl>,
 Efraim Flashner <efraim <at> flashner.co.il>
Subject: [PATCH 0/5] Update vcflib
Date: Sun, 29 Jan 2023 15:09:24 +0200

vcflib has a new update out so it's time to update it and the dependant
packages. libvcfh doesn't seem to be used, perhaps Pjotr knows if it's
needed? I don't love '-DTABIX_FOUND=ON' in vcflib but it seems to work.
I'm also not sure that the simde headers are actually used.

I'd like to use more of the unbundled sources since it seems like a
waste to unbundle them and then just toss the sources back into the
build but they don't natively produce libraries so I'd rather not.
Perhaps it'd be better to just not unbundle them in the first place?

Efraim Flashner (5):
  gnu: intervaltree: Update to 0.1-1.aa59377.
  gnu: tabixpp: Update to 1.1.2.
  gnu: Add wfa2-lib.
  gnu: Add libvcfh.
  gnu: vcflib: Update to 1.0.6.

 gnu/packages/bioinformatics.scm | 217 ++++++++++++++++++++++++--------
 1 file changed, 166 insertions(+), 51 deletions(-)


base-commit: b9e6e31877cdb96cceba4d1ec6268f86b824dec4
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Efraim Flashner   <efraim <at> flashner.co.il>   אפרים פלשנר
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