GNU bug report logs - #61148
[PATCH 0/5] Update vcflib

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Nicolas Goaziou <mail <at> nicolasgoaziou.fr>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#61148: closed ([PATCH 0/5] Update vcflib)
Date: Tue, 18 Mar 2025 20:09:02 +0000

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Your message dated Tue, 18 Mar 2025 21:08:05 +0100
with message-id <87iko6kspm.fsf <at> nicolasgoaziou.fr>
and subject line Re: [PATCH 0/5] Update vcflib
has caused the debbugs.gnu.org bug report #61148,
regarding [PATCH 0/5] Update vcflib
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


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From: Efraim Flashner <efraim <at> flashner.co.il>
To: guix-patches <at> gnu.org
Cc: Pjotr Prins <pjotr.public01 <at> thebird.nl>,
 Efraim Flashner <efraim <at> flashner.co.il>
Subject: [PATCH 0/5] Update vcflib
Date: Sun, 29 Jan 2023 15:09:24 +0200

vcflib has a new update out so it's time to update it and the dependant
packages. libvcfh doesn't seem to be used, perhaps Pjotr knows if it's
needed? I don't love '-DTABIX_FOUND=ON' in vcflib but it seems to work.
I'm also not sure that the simde headers are actually used.

I'd like to use more of the unbundled sources since it seems like a
waste to unbundle them and then just toss the sources back into the
build but they don't natively produce libraries so I'd rather not.
Perhaps it'd be better to just not unbundle them in the first place?

Efraim Flashner (5):
  gnu: intervaltree: Update to 0.1-1.aa59377.
  gnu: tabixpp: Update to 1.1.2.
  gnu: Add wfa2-lib.
  gnu: Add libvcfh.
  gnu: vcflib: Update to 1.0.6.

 gnu/packages/bioinformatics.scm | 217 ++++++++++++++++++++++++--------
 1 file changed, 166 insertions(+), 51 deletions(-)


base-commit: b9e6e31877cdb96cceba4d1ec6268f86b824dec4
-- 
Efraim Flashner   <efraim <at> flashner.co.il>   אפרים פלשנר
GPG key = A28B F40C 3E55 1372 662D  14F7 41AA E7DC CA3D 8351
Confidentiality cannot be guaranteed on emails sent or received unencrypted

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From: Nicolas Goaziou <mail <at> nicolasgoaziou.fr>
To: 61148-done <at> debbugs.gnu.org
Subject: Re: [PATCH 0/5] Update vcflib
Date: Tue, 18 Mar 2025 21:08:05 +0100

vcflib is already at a higher version. Closing.

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