GNU bug report logs - #60997
[patch] gnu: Add python-cmseq, python-cmseq, python-phylophlan and python-metaphlan.

Previous Next

Full log

Message #26 received at 60997 <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 60997 <at> debbugs.gnu.org, debbugs-submit <at> debbugs.gnu.org
Subject: Re: [bug#60997] [PATCH 4/4] gnu: Add python-metaphlan.
Date: Tue, 24 Jan 2023 10:11:36 +0100

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioinformatics.scm (python-metaphlan): New variable.

Unfortunately, this one is also incomplete.

The package includes R code that needs to have its dependencies
satisfied.  It also calls out to bowtie2, and needs raxml, muscle,
blast, etc.

The clash of biopython versions will also need to be addressed.

I’ll push as much as is feasible, but I’d like to ask you to rework this
package definition in particular.

Thanks!

-- 
Ricardo

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.