GNU bug report logs - #60938
[patch] gnu: Add r-breakpointrdata and r-breakpointr

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Message #11 received at 60938 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <60938 <at> debbugs.gnu.org>
Subject: [PATCH 2/2] gnu: Add r-breakpointr.
Date: Wed, 18 Jan 2023 18:35:59 +0100

* gnu/packages/bioconductor.scm (r-breakpointr): New variable.
---
 gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 27f8111982..5a69aecf18 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3500,6 +3500,40 @@ (define-public r-biocgenerics
 packages.")
     (license license:artistic2.0)))
 
+(define-public r-breakpointr
+  (package
+    (name "r-breakpointr")
+    (version "1.16.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "breakpointR" version))
+              (sha256
+               (base32
+                "0j1f43lhgkapjyxlil9fflqh9nf3andhmvirdcv45y60wvljn4gx"))))
+    (properties `((upstream-name . "breakpointR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biocgenerics
+           r-breakpointrdata
+           r-cowplot
+           r-doparallel
+           r-foreach
+           r-genomeinfodb
+           r-genomicalignments
+           r-genomicranges
+           r-ggplot2
+           r-gtools
+           r-iranges
+           r-rsamtools
+           r-s4vectors))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/daewoooo/BreakPointR")
+    (synopsis "Find breakpoints in Strand-seq data")
+    (description
+     "This package implements functions for finding breakpoints, plotting and
+export of Strand-seq data.")
+    (license license:expat)))
+
 (define-public r-cardelino
   (package
     (name "r-cardelino")
-- 
2.39.1

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