From unknown Tue Jun 17 01:47:03 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#60938] [patch] gnu: Add r-breakpointrdata and r-breakpointr Resent-From: "MadalinIonel.Patrascu@mdc-berlin.de" Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 18 Jan 2023 17:34:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 60938 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 60938@debbugs.gnu.org X-Debbugs-Original-To: "guix-patches@gnu.org" Received: via spool by submit@debbugs.gnu.org id=B.167406321832019 (code B ref -1); Wed, 18 Jan 2023 17:34:02 +0000 Received: (at submit) by debbugs.gnu.org; 18 Jan 2023 17:33:38 +0000 Received: from localhost ([127.0.0.1]:41706 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pICJd-0008KM-Pg for submit@debbugs.gnu.org; Wed, 18 Jan 2023 12:33:38 -0500 Received: from lists.gnu.org ([209.51.188.17]:40776) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pICJc-0008KC-AV for submit@debbugs.gnu.org; Wed, 18 Jan 2023 12:33:36 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pICJY-0001p7-8T for guix-patches@gnu.org; Wed, 18 Jan 2023 12:33:32 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pICJW-0001Rj-2U for guix-patches@gnu.org; Wed, 18 Jan 2023 12:33:31 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= mime-version:content-type:content-type:content-language :accept-language:message-id:date:date:subject:subject:from:from :received:received; s=mdc; t=1674063197; x=1675877598; bh=sODJFp Y3KVBLNzmanP65Ve9YjLn6d7ST/lpLJlQQcZc=; b=liV9sBwJuiM5CDC1fGoKl+ oy3MvNDC/haSWp1OPLVw4tGNYFUn51/tsS4j4P5QslONI9ozUH1bRCJYUUJWRLAx XtBEN0qADozxKTQZQ3fp0BDk5aJKOs1t7p/9AEmk0ZNaaRFnCDAIiTiRlxdi26rS ronCDVPqAzAZYadA8TVhM= Received: from SW-IT-P-EX3.mdc-berlin.net (mgw3.mdc-berlin.de [141.80.113.61]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 22615160083 for ; Wed, 18 Jan 2023 18:33:15 +0100 (CET) Received: from SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) by SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Wed, 18 Jan 2023 18:33:14 +0100 Received: from SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a]) by SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a%2]) with mapi id 15.01.2507.017; Wed, 18 Jan 2023 18:33:14 +0100 From: "MadalinIonel.Patrascu@mdc-berlin.de" Thread-Topic: [patch] gnu: Add r-breakpointrdata and r-breakpointr Thread-Index: AQHZK2LAsIb+Yir2uUaVpd91lZ6cJg== Date: Wed, 18 Jan 2023 17:33:14 +0000 Message-ID: <2098d8d186584816ab54d4bf0fae811b@mdc-berlin.de> Accept-Language: en-US, de-DE Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.51] x-tm-as-product-ver: SMEX-14.0.0.3092-9.0.1002-27394.001 x-tm-as-result: No-10--13.884400-5.000000 x-tmase-matchedrid: a3KJLn6RIiKfkHSWeTTytMG0UNgaZpYqGsvgUMYAn4UWzPTbxO7R+tIS YzBUt2RaXVsEWVqYqaivJcrLMYkA70UuXkWTSi/R30kDaWZBE1RU4sxFq6igEUqa6TyhyXvPtAg K4TtXrP1GUsVNd0mL6QC2F/gPANDtCdtCev19Y1LZ6cd1XW8QucogYxpm9PTbAs7f5tvs5+iEIc UVoa0/oH0tCKdnhB58dcD5PxhxmQOrtiDzTp2cZbVQu1GNZ+sicxYeVrfi/UIwFcMc/z9LyiNP3 GgHWnHTxW42GFSRkgAy4x/CSM274X7cGd19dSFd x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--13.884400-5.000000 x-tmase-version: SMEX-14.0.0.3092-9.0.1002-27394.001 x-tm-snts-smtp: FFF636F1A5C50C5730579590ABA37FE36E7CDB36A582550671C9422983B485392002:F Content-Type: multipart/alternative; boundary="_000_2098d8d186584816ab54d4bf0fae811bmdcberlinde_" MIME-Version: 1.0 Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -5 X-Spam_score: -0.6 X-Spam_bar: / X-Spam_report: (-0.6 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, EMPTY_MESSAGE=2.32, HTML_MESSAGE=0.001, MIME_HTML_MOSTLY=0.1, PYZOR_CHECK=1.392, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=no autolearn_force=no X-Spam_action: no action X-Spam-Score: -2.2 (--) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.2 (---) --_000_2098d8d186584816ab54d4bf0fae811bmdcberlinde_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable --_000_2098d8d186584816ab54d4bf0fae811bmdcberlinde_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable


--_000_2098d8d186584816ab54d4bf0fae811bmdcberlinde_-- From unknown Tue Jun 17 01:47:03 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#60938] [PATCH 1/2] gnu: Add r-breakpointrdata. References: <2098d8d186584816ab54d4bf0fae811b@mdc-berlin.de> In-Reply-To: <2098d8d186584816ab54d4bf0fae811b@mdc-berlin.de> Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Wed, 18 Jan 2023 17:37:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 60938 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <60938@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 60938-submit@debbugs.gnu.org id=B60938.167406338932415 (code B ref 60938); Wed, 18 Jan 2023 17:37:02 +0000 Received: (at 60938) by debbugs.gnu.org; 18 Jan 2023 17:36:29 +0000 Received: from localhost ([127.0.0.1]:41712 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pICMP-0008Qk-Av for submit@debbugs.gnu.org; Wed, 18 Jan 2023 12:36:29 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:52711) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pICMN-0008QJ-47 for 60938@debbugs.gnu.org; Wed, 18 Jan 2023 12:36:27 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1674063379; x=1675877780; bh=vE5gTP1EW/lRU5R 2qqFSZwXZ0va8sC13Hu+MnpIMwHc=; b=ZO99BLiHpmIsy8ac9sTpiugJSvdUWeV L2ZQr4d+dMagL2zPhVqANmy/NvH0JF48SHIsD5ODmpinzFmI8v6Xdu8wfR+Jz8Xf +o4Esi+ZEdg/3PbCmXUMA18/imOW1wnDzxRwjtN09XyoWaw/bjhz/FC2GbBWCa7n r3jGK+Tp84o0= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id A4DA8A00E5 for <60938@debbugs.gnu.org>; Wed, 18 Jan 2023 18:36:19 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Wed, 18 Jan 2023 18:36:19 +0100 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Wed, 18 Jan 2023 18:35:58 +0100 Message-ID: <20230118173559.73235-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27394.001 X-TM-AS-Result: No-10--3.156400-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXT/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCz1q+x7zkhJWuuLH9BII+4qrKs axUiN/ykX0jceDJtHIX6VxxWFgkHXo8WMkQWv6iV3LAytsQR4e42j49Ftap9Eymsk/wUE4hrfhH cYdCBpji2D2lkFrSm7smtEjvT7qkBBcZmvivayu4km79DsdqtZvZjYKGnywmAqGFSBjIMTrqyd8 QtKiOUiKySI09+jVzKSi32HRIEsm7TnVnv1JP77sGTvZJmllrz/PhPL0kApH8kjm+elEcbI X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.156400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27394.001 X-TM-SNTS-SMTP: 6AE0FE38331F459EBF5FB1421F549A6FFC22F8DC38C15B33D98B2273DF982CB72002:F X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/bioconductor.scm (r-breakpointrdata): New variable. --- gnu/packages/bioconductor.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ca236bcf75..27f8111982 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1291,6 +1291,26 @@ (define-public r-biscuiteerdata biscuiteer.") (license license:gpl3))) +(define-public r-breakpointrdata + (package + (name "r-breakpointrdata") + (version "1.16.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "breakpointRdata" version 'experiment)) + (sha256 + (base32 + "0f23i4ynb4vgn22c3d2l64z92rzv3qnwd4j8qyvalklrxkwilhfn")))) + (properties `((upstream-name . "breakpointRdata"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://github.com/daewoooo/breakpointRdata") + (synopsis "Strand-seq data for demonstration purposes") + (description + "This packpage is a collection of Strand-seq data. The main pupose is to +demonstrate functionalities of breakpointR package.") + (license license:expat))) + (define-public r-celldex (package (name "r-celldex") base-commit: f088763356e88c4911ee933fdafcad6ed66a7aa3 -- 2.39.1 From unknown Tue Jun 17 01:47:03 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#60938] [PATCH 2/2] gnu: Add r-breakpointr. Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Wed, 18 Jan 2023 17:37:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 60938 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <60938@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 60938-submit@debbugs.gnu.org id=B60938.167406339032422 (code B ref 60938); Wed, 18 Jan 2023 17:37:02 +0000 Received: (at 60938) by debbugs.gnu.org; 18 Jan 2023 17:36:30 +0000 Received: from localhost ([127.0.0.1]:41714 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pICMP-0008Qm-N2 for submit@debbugs.gnu.org; Wed, 18 Jan 2023 12:36:30 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:43315) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pICMN-0008QN-45 for 60938@debbugs.gnu.org; Wed, 18 Jan 2023 12:36:28 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1674063381; x=1675877782; bh=kBfY2ir2uhCRL1LSd+DUAX7bpGHji930jpv/7GkvmEY=; b=htBewX9fRijm j9hY/fATExsdA70jmWk1dF4G0tbG+W17f/+GitNqAFVfsAUv/ICKN/fAw82qoOG2 WcDlikMBCo769IbV1lJ9QfH7nHOoVxIKZLFLgUtjQJ0PnOH8zIexP7/2VsEi1K9V raA3ZX0+iCf5isq8N8OMyVWhH2Q954w= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 0413FA00FD for <60938@debbugs.gnu.org>; Wed, 18 Jan 2023 18:36:21 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Wed, 18 Jan 2023 18:36:19 +0100 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Wed, 18 Jan 2023 18:35:59 +0100 Message-ID: <20230118173559.73235-2-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230118173559.73235-1-madalinionel.patrascu@mdc-berlin.de> References: <20230118173559.73235-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27394.001 X-TM-AS-Result: No-10--0.413400-5.000000 X-TMASE-MatchedRID: JUGAxiLh1cP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6194/5X9VfCyAkbY6/7arYNrDs9HvnBn1mA0 yITMNzjl9LQinZ4QefPcjNeVeWlqY+gtHj7OwNO22utO5qEfOUYuAaf1pLv9xKwqMwmNxj1CZsd X1PnnWo1L3bM/Y1onuF59N94Ca7QE/2E+UFdM+F9uyfwcit/QGDBjpLMF7xLLLQ5N4Q2X53nQJ8 8ZHP8DjvmJf6uotZp79ZjtYmCyQ6k+HGwSCjLh6vuvB6gAgryg= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.413400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27394.001 X-TM-SNTS-SMTP: 55672831C7866B206C59CF32332A7223D8DD610454E7CA13237184D0B25DA7B62002:F X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/bioconductor.scm (r-breakpointr): New variable. --- gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 27f8111982..5a69aecf18 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3500,6 +3500,40 @@ (define-public r-biocgenerics packages.") (license license:artistic2.0))) +(define-public r-breakpointr + (package + (name "r-breakpointr") + (version "1.16.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "breakpointR" version)) + (sha256 + (base32 + "0j1f43lhgkapjyxlil9fflqh9nf3andhmvirdcv45y60wvljn4gx")))) + (properties `((upstream-name . "breakpointR"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocgenerics + r-breakpointrdata + r-cowplot + r-doparallel + r-foreach + r-genomeinfodb + r-genomicalignments + r-genomicranges + r-ggplot2 + r-gtools + r-iranges + r-rsamtools + r-s4vectors)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/daewoooo/BreakPointR") + (synopsis "Find breakpoints in Strand-seq data") + (description + "This package implements functions for finding breakpoints, plotting and +export of Strand-seq data.") + (license license:expat))) + (define-public r-cardelino (package (name "r-cardelino") -- 2.39.1 From unknown Tue Jun 17 01:47:03 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "MadalinIonel.Patrascu@mdc-berlin.de" Subject: bug#60938: closed (Re: [bug#60938] [PATCH 2/2] gnu: Add r-breakpointr.) Message-ID: References: <87lelzikgb.fsf@elephly.net> <2098d8d186584816ab54d4bf0fae811b@mdc-berlin.de> X-Gnu-PR-Message: they-closed 60938 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 60938@debbugs.gnu.org Date: Wed, 18 Jan 2023 21:48:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1674078482-30438-1" This is a multi-part message in MIME format... ------------=_1674078482-30438-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #60938: [patch] gnu: Add r-breakpointrdata and r-breakpointr which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 60938@debbugs.gnu.org. --=20 60938: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D60938 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1674078482-30438-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 60938-done) by debbugs.gnu.org; 18 Jan 2023 21:47:46 +0000 Received: from localhost ([127.0.0.1]:41950 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pIGHa-0007t4-11 for submit@debbugs.gnu.org; Wed, 18 Jan 2023 16:47:46 -0500 Received: from sender3-of-o59.zoho.com ([136.143.184.59]:21939) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pIGHW-0007sX-TX for 60938-done@debbugs.gnu.org; Wed, 18 Jan 2023 16:47:44 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1674078459; cv=none; d=zohomail.com; s=zohoarc; b=EecgEkdZotlOCHbyt06OXnrrRpnKHgbGb+PjlVAQ/T2UovSJdZWMss2ohBGk9d9bA1hfqJwa956IjEOH4RwYnPQV53R4HlPCAcbNpO4ue4h52tEhvdAvOL8LpO5BvRLXRPoIdS97zWdWsGe8u3qQ7lnOoVje0rI2pwusPl/NylI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1674078459; h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To; bh=7mYz1iQNp/uJaE/2jjxRueLB0OtEzHvJ2zmoC03igGI=; b=K8udKUOGNPLFWBkKLKssSkV5hP5qFx+LM9NZMCZ6Eo8fngh0xumBOWzZFfXeKauPzKlrG9IRtRPnXpR31faJO/m8ehi0FvFwDVhsd5dEPOUFzaqmiOmfq0K8u1Ad/V7Q9MBT8SakX207z50T1hZ1R4XEBpuhPjyHY63CElAOswU= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1674078459; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=7mYz1iQNp/uJaE/2jjxRueLB0OtEzHvJ2zmoC03igGI=; b=PITp7G8gIHxo1EWcF2SKyl1rY1zCuUb9mjduB0VP5Wuy6XsYRwuAwo8mioZo/Fna AwciRq5quq1PUCOYNP7Q7BESWoudfw9beU/JQ1fXET8VNnh5WmxxqtZYIozrFqx/otR Tk3OhOAi4FU+NkO7BcaMk3g6s16jqlzzdbGHu1Is= Received: from localhost (196-108-142-46.pool.kielnet.net [46.142.108.196]) by mx.zohomail.com with SMTPS id 1674078456612388.3218247629404; Wed, 18 Jan 2023 13:47:36 -0800 (PST) References: <20230118173559.73235-1-madalinionel.patrascu@mdc-berlin.de> <20230118173559.73235-2-madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.8.13; emacs 28.2 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#60938] [PATCH 2/2] gnu: Add r-breakpointr. Date: Wed, 18 Jan 2023 22:46:30 +0100 In-reply-to: <20230118173559.73235-2-madalinionel.patrascu@mdc-berlin.de> X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87lelzikgb.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 60938-done Cc: 60938-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/bioconductor.scm (r-breakpointrdata): New variable. > * gnu/packages/bioconductor.scm (r-breakpointr): New variable. I applied them both after fixing two typos in the description of r-breakpointrdata. Thanks! --=20 Ricardo ------------=_1674078482-30438-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 18 Jan 2023 17:33:38 +0000 Received: from localhost ([127.0.0.1]:41706 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pICJd-0008KM-Pg for submit@debbugs.gnu.org; Wed, 18 Jan 2023 12:33:38 -0500 Received: from lists.gnu.org ([209.51.188.17]:40776) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pICJc-0008KC-AV for submit@debbugs.gnu.org; Wed, 18 Jan 2023 12:33:36 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pICJY-0001p7-8T for guix-patches@gnu.org; Wed, 18 Jan 2023 12:33:32 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pICJW-0001Rj-2U for guix-patches@gnu.org; Wed, 18 Jan 2023 12:33:31 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= mime-version:content-type:content-type:content-language :accept-language:message-id:date:date:subject:subject:from:from :received:received; s=mdc; t=1674063197; x=1675877598; bh=sODJFp Y3KVBLNzmanP65Ve9YjLn6d7ST/lpLJlQQcZc=; b=liV9sBwJuiM5CDC1fGoKl+ oy3MvNDC/haSWp1OPLVw4tGNYFUn51/tsS4j4P5QslONI9ozUH1bRCJYUUJWRLAx XtBEN0qADozxKTQZQ3fp0BDk5aJKOs1t7p/9AEmk0ZNaaRFnCDAIiTiRlxdi26rS ronCDVPqAzAZYadA8TVhM= Received: from SW-IT-P-EX3.mdc-berlin.net (mgw3.mdc-berlin.de [141.80.113.61]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 22615160083 for ; Wed, 18 Jan 2023 18:33:15 +0100 (CET) Received: from SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) by SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Wed, 18 Jan 2023 18:33:14 +0100 Received: from SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a]) by SW-IT-P-EX4.mdc-berlin.net ([fe80::e55f:895f:3b41:ec6a%2]) with mapi id 15.01.2507.017; Wed, 18 Jan 2023 18:33:14 +0100 From: "MadalinIonel.Patrascu@mdc-berlin.de" To: "guix-patches@gnu.org" Subject: [patch] gnu: Add r-breakpointrdata and r-breakpointr Thread-Topic: [patch] gnu: Add r-breakpointrdata and r-breakpointr Thread-Index: AQHZK2LAsIb+Yir2uUaVpd91lZ6cJg== Date: Wed, 18 Jan 2023 17:33:14 +0000 Message-ID: <2098d8d186584816ab54d4bf0fae811b@mdc-berlin.de> Accept-Language: en-US, de-DE Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.51] x-tm-as-product-ver: SMEX-14.0.0.3092-9.0.1002-27394.001 x-tm-as-result: No-10--13.884400-5.000000 x-tmase-matchedrid: a3KJLn6RIiKfkHSWeTTytMG0UNgaZpYqGsvgUMYAn4UWzPTbxO7R+tIS YzBUt2RaXVsEWVqYqaivJcrLMYkA70UuXkWTSi/R30kDaWZBE1RU4sxFq6igEUqa6TyhyXvPtAg K4TtXrP1GUsVNd0mL6QC2F/gPANDtCdtCev19Y1LZ6cd1XW8QucogYxpm9PTbAs7f5tvs5+iEIc UVoa0/oH0tCKdnhB58dcD5PxhxmQOrtiDzTp2cZbVQu1GNZ+sicxYeVrfi/UIwFcMc/z9LyiNP3 GgHWnHTxW42GFSRkgAy4x/CSM274X7cGd19dSFd x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--13.884400-5.000000 x-tmase-version: SMEX-14.0.0.3092-9.0.1002-27394.001 x-tm-snts-smtp: FFF636F1A5C50C5730579590ABA37FE36E7CDB36A582550671C9422983B485392002:F Content-Type: multipart/alternative; boundary="_000_2098d8d186584816ab54d4bf0fae811bmdcberlinde_" MIME-Version: 1.0 Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -5 X-Spam_score: -0.6 X-Spam_bar: / X-Spam_report: (-0.6 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, EMPTY_MESSAGE=2.32, HTML_MESSAGE=0.001, MIME_HTML_MOSTLY=0.1, PYZOR_CHECK=1.392, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=no autolearn_force=no X-Spam_action: no action X-Spam-Score: -2.2 (--) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.2 (---) --_000_2098d8d186584816ab54d4bf0fae811bmdcberlinde_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable --_000_2098d8d186584816ab54d4bf0fae811bmdcberlinde_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable


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